Gene annotation
| Transcriptome id | Sobic.002G317500.1,Sobic.002G317500.2 |
|---|---|
| Synonym | Sb02g034660 |
| Functional annotation | protein phosphatase 2C, putative, expressed |
| UniProt | C5XA03 , A0A1B6QEK1 |
| Pfam | PF00481 |
| Panther DB | PTHR13832 PTHR13832:SF372 |
| NCBI CDD | KOG0698; Serine/threonine protein phosphatase |
| KEGG Orthology | K17506; PPM1L, protein phosphatase 1L |
| Gene Ontology | GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity |
Orthologs (automatic annotation)
| TAIR | AT3G15260 : Protein phosphatase 2C family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g32380.1 : protein phosphatase 2C, putative, expressed |
| MaizeGDB (Corn) | Zm00025a014775 |
| Brachypodium | - |
| Barley | HORVU2Hr1G046600.1 , HORVU2Hr1G046600.2 , HORVU2Hr1G046600.3 , HORVU2Hr1G046600.4 , HORVU2Hr1G046600.5 , HORVU2Hr1G046600.6 , HORVU2Hr1G046600.7 |
| Wheat | TraesCS2D02G228700 , TraesCS2A02G222700 |
| Populus | - |
JBrowse
| Sobic.002G317500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G209400 | ubiquinone oxidoreductase, putative, expressed | K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7 |
| 2 | Sobic.004G092700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 3 | Sobic.002G111400 | heavy metal-associated domain containing protein, expressed | - |
| 4 | Sobic.002G302300 | cysteine proteinase A494 precursor, putative, expressed | K01373: cathepsin F |
| 5 | Sobic.007G075250 | - | - |
| 6 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 7 | Sobic.001G088600 | universal stress protein domain containing protein, putative, expressed | - |
| 8 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 9 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 10 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 11 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 12 | Sobic.003G270200 | dehydrin family protein, expressed | - |
| 13 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 14 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 15 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 16 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 17 | Sobic.006G107900 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 18 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
| 19 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
| 20 | Sobic.010G142900 | oleosin, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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