Gene annotation
| Transcriptome id | Sobic.003G270200.1 |
|---|---|
| Synonym | LEA |
| Functional annotation | dehydrin family protein, expressed |
| UniProt | A0A1B6Q5L6 |
| Pfam | PF00257 |
| Panther DB | PTHR33346 PTHR33346:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009415; response to water GO:0006950response to stress |
Orthologs (automatic annotation)
| TAIR | AT3G50980 : dehydrin xero 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g50700.1 : dehydrin family protein, expressed |
| MaizeGDB (Corn) | Zm00025a027886 |
| Brachypodium | KQK09367 |
| Barley | HORVU5Hr1G103460.3 , HORVU5Hr1G103460.2 |
| Wheat | TraesCS3D02G255500 , TraesCS3A02G254600 , TraesCS3B02G286600 |
| Populus | - |
JBrowse
| Sobic.003G270200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 2 | Sobic.004G092700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 3 | Sobic.006G210500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, group 3, putative, expressed | - |
| 4 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 5 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 6 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 7 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 8 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 9 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 10 | Sobic.002G111400 | heavy metal-associated domain containing protein, expressed | - |
| 11 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 12 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 13 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 14 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 15 | Sobic.009G209400 | ubiquinone oxidoreductase, putative, expressed | K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7 |
| 16 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 17 | Sobic.010G007800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed | - |
| 18 | Sobic.003G400400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine proteinase inhibitor precursor protein, putative, expressed | - |
| 19 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 20 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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