Gene annotation
| Transcriptome id | Sobic.006G210500.3,Sobic.006G210500.2 |
|---|---|
| Synonym | Sb06g028110 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) late embryogenesis abundant protein, group 3, putative, expressed |
| UniProt | A0A1B6PMZ2 , A0A1B6PN59 |
| Pfam | - |
| Panther DB | PTHR23241 PTHR23241:SF51 |
| NCBI CDD | KOG4744; Uncharacterized conserved protein |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G44310 : Late embryogenesis abundant protein (LEA) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g52110.1 : late embryogenesis abundant protein, group 3, putative, expressed |
| MaizeGDB (Corn) | Zm00025a009839 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.006G210500 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G270200 | dehydrin family protein, expressed | - |
| 2 | Sobic.006G155300 | aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 3 | Sobic.001G469300 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cupin domain containing protein, expressed | - |
| 4 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 5 | Sobic.007G197500 | expressed protein | - |
| 6 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 7 | Sobic.001G505900 | UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 8 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 9 | Sobic.004G092700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 10 | Sobic.002G143300 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 11 | Sobic.005G165700 | AMBP1 - Antimicrobial peptide MBP-1 family protein precursor, expressed | - |
| 12 | Sobic.010G007800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed | - |
| 13 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 14 | Sobic.002G374500 | - | - |
| 15 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 16 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 17 | Sobic.001G144900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@cupin domain containing protein, expressed | - |
| 18 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 19 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 20 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
