Gene annotation
| Transcriptome id | Sobic.001G144900.1 |
|---|---|
| Synonym | PAP85, Sb01g012640 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543) Up-reguralion under drought (PubMedID : 24916767) cupin domain containing protein, expressed |
| UniProt | A0A1Z5S5M9 |
| Pfam | PF00190 |
| Panther DB | PTHR31189 PTHR31189:SF9 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G22640 : cupin family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os03g46100.1 : cupin domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a027519 , Zm00025a007527 |
| Brachypodium | KQK13874 |
| Barley | HORVU4Hr1G002800.2 , HORVU4Hr1G002800.3 |
| Wheat | TraesCS4B02G017500 |
| Populus | - |
JBrowse
| Sobic.001G144900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 2 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 3 | Sobic.005G167650 | - | - |
| 4 | Sobic.010G007800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed | - |
| 5 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 6 | Sobic.009G104500 | small hydrophilic plant seed protein, putative, expressed | - |
| 7 | Sobic.002G383500 | expressed protein | - |
| 8 | Sobic.004G091600 | ethylene receptor, putative, expressed | K14509: ETR, ethylene receptor |
| 9 | Sobic.007G004900 | expressed protein | - |
| 10 | Sobic.002G143300 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 11 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 12 | Sobic.001G311200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 13 | Sobic.008G112550 | - | - |
| 14 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 15 | Sobic.004G092700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 16 | Sobic.007G218500 | (50.9% identity with SbCCoAOMT/68.5% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed | K18883: tricin synthase |
| 17 | Sobic.002G231100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZF-HD protein dimerisation region containing protein, expressed | - |
| 18 | Sobic.010G256100 | LTPL154 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 19 | Sobic.002G138000 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11252: histone H2B |
| 20 | Sobic.003G270200 | dehydrin family protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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