Gene annotation
Transcriptome id Sobic.002G383500.1
Synonym Sb02g039980
Functional annotation expressed protein
UniProt C5X2L3
Pfam -
Panther DB PTHR34776 PTHR34776:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G16770 : -
RAP-DB (Rice) LOC_Os02g04780.1 : expressed protein
MaizeGDB (Corn) Zm00025a048825
Brachypodium -
Barley HORVU6Hr1G020080.2 , HORVU6Hr1G020080.3 , HORVU6Hr1G020080.1
Wheat TraesCS6A02G111700 , TraesCS6D02G100500 , TraesCS6D02G100500 , TraesCS6B02G139800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G383500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G004900 expressed protein -
2 Sobic.002G143300 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
3 Sobic.001G144900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@cupin domain containing protein, expressed -
4 Sobic.006G084100 expressed protein -
5 Sobic.002G138000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11252: histone H2B
6 Sobic.002G231100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZF-HD protein dimerisation region containing protein, expressed -
7 Sobic.009G026850 - -
8 Sobic.001G497700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed -
9 Sobic.001G311200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
10 Sobic.009G104600 small hydrophilic plant seed protein, putative, expressed -
11 Sobic.008G112550 - -
12 Sobic.010G007800 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed -
13 Sobic.001G211000 RIPER3 - Ripening-related family protein precursor, putative, expressed -
14 Sobic.005G167650 - -
15 Sobic.008G102050 - -
16 Sobic.006G278950 - -
17 Sobic.006G269501 - -
18 Sobic.010G133000 late embryogenesis abundant group 1, putative, expressed -
19 Sobic.002G151200 seed maturation protein LEA 4, putative, expressed -
20 Sobic.010G147966 - -


Gene co-expression network
sample Sobic002G383500 Sobic002G383500 Sobic007G004900 Sobic007G004900 Sobic002G383500--Sobic007G004900 Sobic002G143300 Sobic002G143300 Sobic002G383500--Sobic002G143300 Sobic001G144900 Sobic001G144900 Sobic002G383500--Sobic001G144900 Sobic006G084100 Sobic006G084100 Sobic002G383500--Sobic006G084100 Sobic002G138000 Sobic002G138000 Sobic002G383500--Sobic002G138000 Sobic002G231100 Sobic002G231100 Sobic002G383500--Sobic002G231100 Sobic009G026850 Sobic009G026850 Sobic002G383500--Sobic009G026850 Sobic001G497700 Sobic001G497700 Sobic002G383500--Sobic001G497700 Sobic001G311200 Sobic001G311200 Sobic002G383500--Sobic001G311200 Sobic007G004900--Sobic001G311200 Sobic004G111500 Sobic004G111500 Sobic007G004900--Sobic004G111500 Sobic007G004900--Sobic002G383500 Sobic001G091000 Sobic001G091000 Sobic007G004900--Sobic001G091000 Sobic007G004900--Sobic006G084100 Sobic007G004900--Sobic001G144900 Sobic004G092700 Sobic004G092700 Sobic007G004900--Sobic004G092700 Sobic002G243100 Sobic002G243100 Sobic007G004900--Sobic002G243100 Sobic007G004900--Sobic002G231100 Sobic002G413200 Sobic002G413200 Sobic002G143300--Sobic002G413200 Sobic010G007800 Sobic010G007800 Sobic002G143300--Sobic010G007800 Sobic007G153600 Sobic007G153600 Sobic002G143300--Sobic007G153600 Sobic002G143300--Sobic002G383500 Sobic010G133000 Sobic010G133000 Sobic002G143300--Sobic010G133000 Sobic002G143300--Sobic001G497700 Sobic009G104600 Sobic009G104600 Sobic002G143300--Sobic009G104600 Sobic003G130400 Sobic003G130400 Sobic002G143300--Sobic003G130400 Sobic005G167650 Sobic005G167650 Sobic002G143300--Sobic005G167650 Sobic001G144900--Sobic001G497700 Sobic001G144900--Sobic009G104600 Sobic001G144900--Sobic005G167650 Sobic001G144900--Sobic010G007800 Sobic002G185100 Sobic002G185100 Sobic001G144900--Sobic002G185100 Sobic009G104500 Sobic009G104500 Sobic001G144900--Sobic009G104500 Sobic001G144900--Sobic002G383500 Sobic004G091600 Sobic004G091600 Sobic001G144900--Sobic004G091600 Sobic001G144900--Sobic007G004900 Sobic001G388100 Sobic001G388100 Sobic006G084100--Sobic001G388100 Sobic006G278950 Sobic006G278950 Sobic006G084100--Sobic006G278950 Sobic001G211000 Sobic001G211000 Sobic006G084100--Sobic001G211000 Sobic001G495850 Sobic001G495850 Sobic006G084100--Sobic001G495850 Sobic003G242600 Sobic003G242600 Sobic006G084100--Sobic003G242600 Sobic010G090800 Sobic010G090800 Sobic006G084100--Sobic010G090800 Sobic006G084100--Sobic001G311200 Sobic009G150800 Sobic009G150800 Sobic006G084100--Sobic009G150800 Sobic006G084100--Sobic007G004900 Sobic002G138000--Sobic002G383500 Sobic002G138000--Sobic002G231100 Sobic002G138000--Sobic001G144900 Sobic008G102050 Sobic008G102050 Sobic002G138000--Sobic008G102050 Sobic002G138000--Sobic006G084100 Sobic007G197500 Sobic007G197500 Sobic002G138000--Sobic007G197500 Sobic002G138000--Sobic007G004900 Sobic002G356300 Sobic002G356300 Sobic002G138000--Sobic002G356300 Sobic008G112550 Sobic008G112550 Sobic002G138000--Sobic008G112550 Sobic002G231100--Sobic008G102050 Sobic002G231100--Sobic002G138000 Sobic002G231100--Sobic001G144900 Sobic002G231100--Sobic006G084100 Sobic002G231100--Sobic002G383500 Sobic002G231100--Sobic007G004900 Sobic002G231100--Sobic001G311200 Sobic002G231100--Sobic001G091000 Sobic002G231100--Sobic001G388100 Sobic010G147966 Sobic010G147966 Sobic009G026850--Sobic010G147966 Sobic004G049600 Sobic004G049600 Sobic009G026850--Sobic004G049600 Sobic009G026850--Sobic002G143300 Sobic009G026850--Sobic002G383500 Sobic009G026850--Sobic008G112550 Sobic009G026850--Sobic005G167650 Sobic009G026850--Sobic001G144900 Sobic009G026850--Sobic001G497700 Sobic009G026850--Sobic010G007800 Sobic001G497700--Sobic009G104600 Sobic001G497700--Sobic010G007800 Sobic001G497700--Sobic009G104500 Sobic001G497700--Sobic002G185100 Sobic001G497700--Sobic001G144900 Sobic001G497700--Sobic005G167650 Sobic007G218500 Sobic007G218500 Sobic001G497700--Sobic007G218500 Sobic001G497700--Sobic004G091600 Sobic001G497700--Sobic003G130400 Sobic001G311200--Sobic007G004900 Sobic001G311200--Sobic004G111500 Sobic001G311200--Sobic001G091000 Sobic001G311200--Sobic006G084100 Sobic001G311200--Sobic001G144900 Sobic004G195900 Sobic004G195900 Sobic001G311200--Sobic004G195900 Sobic001G311200--Sobic004G092700 Sobic001G311200--Sobic002G243100 Sobic001G311200--Sobic006G278950
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.