Gene annotation
Transcriptome id Sobic.001G311200.1
Synonym Sb01g030345,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
Up-reguralion under heat (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
expressed protein
UniProt C5WTK2
Pfam PF02068
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT2G23240 : Plant EC metallothionein-like protein, family 15
RAP-DB (Rice) LOC_Os10g39610.2 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ97624
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G311200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G004900 expressed protein -
2 Sobic.004G111500 Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant domain-containing protein, putative, expressed -
3 Sobic.001G091000 late embryogenesis abundant protein D-34, putative, expressed -
4 Sobic.006G084100 expressed protein -
5 Sobic.001G144900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@cupin domain containing protein, expressed -
6 Sobic.004G195900 late embryogenesis abundant protein D-34, putative, expressed -
7 Sobic.004G092700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
8 Sobic.002G243100 expressed protein -
9 Sobic.006G278950 - -
10 Sobic.002G383500 expressed protein -
11 Sobic.002G231100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZF-HD protein dimerisation region containing protein, expressed -
12 Sobic.001G515700 expressed protein -
13 Sobic.001G495850 - -
14 Sobic.001G211000 RIPER3 - Ripening-related family protein precursor, putative, expressed -
15 Sobic.004G196900 - -
16 Sobic.001G388100 Up-reguralion under drought(PubMedID : 24916767)@Late embryogenesis abundant protein 1("PubMedID : 26759170,PubMedID : 24597475")@late embryogenesis abundant protein 1, putative, expressed -
17 Sobic.008G096500 plant protein of unknown function domain containing protein, expressed -
18 Sobic.001G241000 late embryogenesis abundant protein D-34, putative, expressed -
19 Sobic.008G102050 - -
20 Sobic.009G104600 small hydrophilic plant seed protein, putative, expressed -


Gene co-expression network
sample Sobic001G311200 Sobic001G311200 Sobic007G004900 Sobic007G004900 Sobic001G311200--Sobic007G004900 Sobic004G111500 Sobic004G111500 Sobic001G311200--Sobic004G111500 Sobic001G091000 Sobic001G091000 Sobic001G311200--Sobic001G091000 Sobic006G084100 Sobic006G084100 Sobic001G311200--Sobic006G084100 Sobic001G144900 Sobic001G144900 Sobic001G311200--Sobic001G144900 Sobic004G195900 Sobic004G195900 Sobic001G311200--Sobic004G195900 Sobic004G092700 Sobic004G092700 Sobic001G311200--Sobic004G092700 Sobic002G243100 Sobic002G243100 Sobic001G311200--Sobic002G243100 Sobic006G278950 Sobic006G278950 Sobic001G311200--Sobic006G278950 Sobic007G004900--Sobic001G311200 Sobic007G004900--Sobic004G111500 Sobic002G383500 Sobic002G383500 Sobic007G004900--Sobic002G383500 Sobic007G004900--Sobic001G091000 Sobic007G004900--Sobic006G084100 Sobic007G004900--Sobic001G144900 Sobic007G004900--Sobic004G092700 Sobic007G004900--Sobic002G243100 Sobic002G231100 Sobic002G231100 Sobic007G004900--Sobic002G231100 Sobic004G111500--Sobic001G091000 Sobic004G111500--Sobic001G311200 Sobic004G111500--Sobic004G195900 Sobic004G111500--Sobic007G004900 Sobic001G241000 Sobic001G241000 Sobic004G111500--Sobic001G241000 Sobic004G111500--Sobic004G092700 Sobic004G111500--Sobic002G243100 Sobic001G090900 Sobic001G090900 Sobic004G111500--Sobic001G090900 Sobic004G111500--Sobic006G084100 Sobic001G091000--Sobic004G111500 Sobic001G091000--Sobic001G311200 Sobic001G091000--Sobic007G004900 Sobic001G091000--Sobic004G195900 Sobic001G091000--Sobic001G241000 Sobic001G091000--Sobic004G092700 Sobic001G091000--Sobic002G243100 Sobic001G091000--Sobic006G084100 Sobic004G196900 Sobic004G196900 Sobic001G091000--Sobic004G196900 Sobic001G388100 Sobic001G388100 Sobic006G084100--Sobic001G388100 Sobic006G084100--Sobic006G278950 Sobic001G211000 Sobic001G211000 Sobic006G084100--Sobic001G211000 Sobic001G495850 Sobic001G495850 Sobic006G084100--Sobic001G495850 Sobic003G242600 Sobic003G242600 Sobic006G084100--Sobic003G242600 Sobic010G090800 Sobic010G090800 Sobic006G084100--Sobic010G090800 Sobic006G084100--Sobic001G311200 Sobic009G150800 Sobic009G150800 Sobic006G084100--Sobic009G150800 Sobic006G084100--Sobic007G004900 Sobic001G497700 Sobic001G497700 Sobic001G144900--Sobic001G497700 Sobic009G104600 Sobic009G104600 Sobic001G144900--Sobic009G104600 Sobic005G167650 Sobic005G167650 Sobic001G144900--Sobic005G167650 Sobic010G007800 Sobic010G007800 Sobic001G144900--Sobic010G007800 Sobic002G185100 Sobic002G185100 Sobic001G144900--Sobic002G185100 Sobic009G104500 Sobic009G104500 Sobic001G144900--Sobic009G104500 Sobic001G144900--Sobic002G383500 Sobic004G091600 Sobic004G091600 Sobic001G144900--Sobic004G091600 Sobic001G144900--Sobic007G004900 Sobic004G195900--Sobic004G111500 Sobic004G195900--Sobic004G092700 Sobic004G195900--Sobic001G091000 Sobic009G115200 Sobic009G115200 Sobic004G195900--Sobic009G115200 Sobic004G195900--Sobic001G241000 Sobic004G195900--Sobic001G311200 Sobic004G083600 Sobic004G083600 Sobic004G195900--Sobic004G083600 Sobic002G317500 Sobic002G317500 Sobic004G195900--Sobic002G317500 Sobic009G209400 Sobic009G209400 Sobic004G195900--Sobic009G209400 Sobic004G092700--Sobic002G317500 Sobic003G270200 Sobic003G270200 Sobic004G092700--Sobic003G270200 Sobic010G041900 Sobic010G041900 Sobic004G092700--Sobic010G041900 Sobic003G130400 Sobic003G130400 Sobic004G092700--Sobic003G130400 Sobic004G092700--Sobic009G209400 Sobic004G092700--Sobic002G185100 Sobic004G092700--Sobic004G195900 Sobic002G111400 Sobic002G111400 Sobic004G092700--Sobic002G111400 Sobic007G162700 Sobic007G162700 Sobic004G092700--Sobic007G162700 Sobic002G243100--Sobic004G196900 Sobic002G243100--Sobic001G495850 Sobic002G243100--Sobic001G388100 Sobic003G241400 Sobic003G241400 Sobic002G243100--Sobic003G241400 Sobic001G515700 Sobic001G515700 Sobic002G243100--Sobic001G515700 Sobic007G088300 Sobic007G088300 Sobic002G243100--Sobic007G088300 Sobic002G243100--Sobic009G150800 Sobic002G089300 Sobic002G089300 Sobic002G243100--Sobic002G089300 Sobic002G243100--Sobic001G090900 Sobic006G278950--Sobic006G084100 Sobic006G278950--Sobic001G211000 Sobic006G278950--Sobic003G242600 Sobic006G278950--Sobic010G090800 Sobic003G005400 Sobic003G005400 Sobic006G278950--Sobic003G005400 Sobic006G278950--Sobic001G388100 Sobic003G429101 Sobic003G429101 Sobic006G278950--Sobic003G429101 Sobic003G046900 Sobic003G046900 Sobic006G278950--Sobic003G046900 Sobic008G096500 Sobic008G096500 Sobic006G278950--Sobic008G096500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.