Gene annotation
Transcriptome id Sobic.004G195900.1
Synonym Sb04g024280
Functional annotation late embryogenesis abundant protein D-34, putative, expressed
UniProt C5XWC7
Pfam PF04927
Panther DB PTHR31174 PTHR31174:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G22490 : Seed maturation protein
RAP-DB (Rice) LOC_Os12g43140.1 : late embryogenesis abundant protein D-34, putative, expressed
MaizeGDB (Corn) Zm00025a021375
Brachypodium -
Barley HORVU5Hr1G005930.1 , HORVU5Hr1G005910.1
Wheat TraesCS5A02G021400 , TraesCS5D02G026500
Populus -


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cDNA sequences
Sobic.004G195900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G111500 Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant domain-containing protein, putative, expressed -
2 Sobic.004G092700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
3 Sobic.001G091000 late embryogenesis abundant protein D-34, putative, expressed -
4 Sobic.009G115200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
5 Sobic.001G241000 late embryogenesis abundant protein D-34, putative, expressed -
6 Sobic.001G311200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
7 Sobic.004G083600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
8 Sobic.002G317500 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
9 Sobic.009G209400 ubiquinone oxidoreductase, putative, expressed K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7
10 Sobic.009G191801 - -
11 Sobic.002G111400 heavy metal-associated domain containing protein, expressed -
12 Sobic.001G088600 universal stress protein domain containing protein, putative, expressed -
13 Sobic.007G004900 expressed protein -
14 Sobic.006G093500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
15 Sobic.003G270200 dehydrin family protein, expressed -
16 Sobic.009G227300 "BG3(Ortholog in rice:Xiao et al., 2018)"(PubMedID : 31659926)@purine permease, putative, expressed -
17 Sobic.010G041900 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed -
18 Sobic.003G130400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed -
19 Sobic.001G515700 expressed protein -
20 Sobic.001G090900 late embryogenesis abundant protein D-34, putative, expressed -


Gene co-expression network
sample Sobic004G195900 Sobic004G195900 Sobic004G111500 Sobic004G111500 Sobic004G195900--Sobic004G111500 Sobic004G092700 Sobic004G092700 Sobic004G195900--Sobic004G092700 Sobic001G091000 Sobic001G091000 Sobic004G195900--Sobic001G091000 Sobic009G115200 Sobic009G115200 Sobic004G195900--Sobic009G115200 Sobic001G241000 Sobic001G241000 Sobic004G195900--Sobic001G241000 Sobic001G311200 Sobic001G311200 Sobic004G195900--Sobic001G311200 Sobic004G083600 Sobic004G083600 Sobic004G195900--Sobic004G083600 Sobic002G317500 Sobic002G317500 Sobic004G195900--Sobic002G317500 Sobic009G209400 Sobic009G209400 Sobic004G195900--Sobic009G209400 Sobic004G111500--Sobic001G091000 Sobic004G111500--Sobic001G311200 Sobic004G111500--Sobic004G195900 Sobic007G004900 Sobic007G004900 Sobic004G111500--Sobic007G004900 Sobic004G111500--Sobic001G241000 Sobic004G111500--Sobic004G092700 Sobic002G243100 Sobic002G243100 Sobic004G111500--Sobic002G243100 Sobic001G090900 Sobic001G090900 Sobic004G111500--Sobic001G090900 Sobic006G084100 Sobic006G084100 Sobic004G111500--Sobic006G084100 Sobic004G092700--Sobic002G317500 Sobic003G270200 Sobic003G270200 Sobic004G092700--Sobic003G270200 Sobic010G041900 Sobic010G041900 Sobic004G092700--Sobic010G041900 Sobic003G130400 Sobic003G130400 Sobic004G092700--Sobic003G130400 Sobic004G092700--Sobic009G209400 Sobic002G185100 Sobic002G185100 Sobic004G092700--Sobic002G185100 Sobic004G092700--Sobic004G195900 Sobic002G111400 Sobic002G111400 Sobic004G092700--Sobic002G111400 Sobic007G162700 Sobic007G162700 Sobic004G092700--Sobic007G162700 Sobic001G091000--Sobic004G111500 Sobic001G091000--Sobic001G311200 Sobic001G091000--Sobic007G004900 Sobic001G091000--Sobic004G195900 Sobic001G091000--Sobic001G241000 Sobic001G091000--Sobic004G092700 Sobic001G091000--Sobic002G243100 Sobic001G091000--Sobic006G084100 Sobic004G196900 Sobic004G196900 Sobic001G091000--Sobic004G196900 Sobic009G191801 Sobic009G191801 Sobic009G115200--Sobic009G191801 Sobic009G115200--Sobic004G083600 Sobic006G121700 Sobic006G121700 Sobic009G115200--Sobic006G121700 Sobic001G088600 Sobic001G088600 Sobic009G115200--Sobic001G088600 Sobic001G243666 Sobic001G243666 Sobic009G115200--Sobic001G243666 Sobic009G115200--Sobic002G111400 Sobic009G115200--Sobic004G195900 Sobic009G227300 Sobic009G227300 Sobic009G115200--Sobic009G227300 Sobic004G190200 Sobic004G190200 Sobic009G115200--Sobic004G190200 Sobic001G241000--Sobic004G111500 Sobic001G241000--Sobic004G195900 Sobic001G241000--Sobic001G091000 Sobic001G241000--Sobic009G115200 Sobic003G302466 Sobic003G302466 Sobic001G241000--Sobic003G302466 Sobic001G241000--Sobic004G083600 Sobic001G241000--Sobic001G090900 Sobic001G241000--Sobic009G227300 Sobic002G282800 Sobic002G282800 Sobic001G241000--Sobic002G282800 Sobic001G311200--Sobic007G004900 Sobic001G311200--Sobic004G111500 Sobic001G311200--Sobic001G091000 Sobic001G311200--Sobic006G084100 Sobic001G144900 Sobic001G144900 Sobic001G311200--Sobic001G144900 Sobic001G311200--Sobic004G195900 Sobic001G311200--Sobic004G092700 Sobic001G311200--Sobic002G243100 Sobic006G278950 Sobic006G278950 Sobic001G311200--Sobic006G278950 Sobic004G083600--Sobic009G115200 Sobic004G083600--Sobic009G191801 Sobic004G083600--Sobic004G195900 Sobic004G083600--Sobic001G241000 Sobic004G083600--Sobic004G111500 Sobic004G083600--Sobic001G088600 Sobic004G083600--Sobic009G227300 Sobic004G083600--Sobic002G111400 Sobic006G093500 Sobic006G093500 Sobic004G083600--Sobic006G093500 Sobic002G317500--Sobic009G209400 Sobic002G317500--Sobic004G092700 Sobic002G317500--Sobic002G111400 Sobic002G302300 Sobic002G302300 Sobic002G317500--Sobic002G302300 Sobic007G075250 Sobic007G075250 Sobic002G317500--Sobic007G075250 Sobic001G017500 Sobic001G017500 Sobic002G317500--Sobic001G017500 Sobic002G317500--Sobic001G088600 Sobic002G317500--Sobic010G041900 Sobic002G118300 Sobic002G118300 Sobic002G317500--Sobic002G118300 Sobic009G209400--Sobic002G317500 Sobic009G209400--Sobic002G302300 Sobic009G209400--Sobic007G075250 Sobic009G209400--Sobic002G111400 Sobic009G209400--Sobic001G088600 Sobic009G209400--Sobic001G017500 Sobic009G209400--Sobic004G092700 Sobic009G209400--Sobic002G118300 Sobic009G209400--Sobic009G191801
Octagon: transcription factors


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