Gene annotation
Transcriptome id Sobic.004G083600.1
Synonym Sb04g006890
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
hsp20/alpha crystallin family protein, putative, expressed
UniProt C5XXL0
Pfam PF00011
Panther DB PTHR11527 PTHR11527:SF173
NCBI CDD KOG3591; Alpha crystallins
KEGG Orthology K13993; HSP20 family protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52560 : HSP20-like chaperones superfamily protein
RAP-DB (Rice) LOC_Os02g10710.1 : hsp20/alpha crystallin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a019560
Brachypodium PNT66118
Barley HORVU6Hr1G038320.1
Wheat TraesCS6A02G181700 , TraesCS6D02G169100
Populus -


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cDNA sequences
Sobic.004G083600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G115200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
2 Sobic.009G191801 - -
3 Sobic.004G195900 late embryogenesis abundant protein D-34, putative, expressed -
4 Sobic.001G241000 late embryogenesis abundant protein D-34, putative, expressed -
5 Sobic.004G111500 Up-reguralion under drought(PubMedID : 24916767)@late embryogenesis abundant domain-containing protein, putative, expressed -
6 Sobic.001G088600 universal stress protein domain containing protein, putative, expressed -
7 Sobic.009G227300 "BG3(Ortholog in rice:Xiao et al., 2018)"(PubMedID : 31659926)@purine permease, putative, expressed -
8 Sobic.002G111400 heavy metal-associated domain containing protein, expressed -
9 Sobic.006G093500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
10 Sobic.009G209400 ubiquinone oxidoreductase, putative, expressed K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7
11 Sobic.006G121700 expressed protein -
12 Sobic.001G243666 - -
13 Sobic.004G092700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
14 Sobic.002G317500 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
15 Sobic.001G091000 late embryogenesis abundant protein D-34, putative, expressed -
16 Sobic.003G302466 - -
17 Sobic.001G090900 late embryogenesis abundant protein D-34, putative, expressed -
18 Sobic.001G185200 expressed protein -
19 Sobic.004G190200 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
20 Sobic.010G164100 aquaporin protein, putative, expressed K09874: aquaporin NIP


Gene co-expression network
sample Sobic004G083600 Sobic004G083600 Sobic009G115200 Sobic009G115200 Sobic004G083600--Sobic009G115200 Sobic009G191801 Sobic009G191801 Sobic004G083600--Sobic009G191801 Sobic004G195900 Sobic004G195900 Sobic004G083600--Sobic004G195900 Sobic001G241000 Sobic001G241000 Sobic004G083600--Sobic001G241000 Sobic004G111500 Sobic004G111500 Sobic004G083600--Sobic004G111500 Sobic001G088600 Sobic001G088600 Sobic004G083600--Sobic001G088600 Sobic009G227300 Sobic009G227300 Sobic004G083600--Sobic009G227300 Sobic002G111400 Sobic002G111400 Sobic004G083600--Sobic002G111400 Sobic006G093500 Sobic006G093500 Sobic004G083600--Sobic006G093500 Sobic009G115200--Sobic009G191801 Sobic009G115200--Sobic004G083600 Sobic006G121700 Sobic006G121700 Sobic009G115200--Sobic006G121700 Sobic009G115200--Sobic001G088600 Sobic001G243666 Sobic001G243666 Sobic009G115200--Sobic001G243666 Sobic009G115200--Sobic002G111400 Sobic009G115200--Sobic004G195900 Sobic009G115200--Sobic009G227300 Sobic004G190200 Sobic004G190200 Sobic009G115200--Sobic004G190200 Sobic009G191801--Sobic009G115200 Sobic009G191801--Sobic006G121700 Sobic009G191801--Sobic001G088600 Sobic009G191801--Sobic001G243666 Sobic009G191801--Sobic002G111400 Sobic009G191801--Sobic004G190200 Sobic009G209400 Sobic009G209400 Sobic009G191801--Sobic009G209400 Sobic010G164100 Sobic010G164100 Sobic009G191801--Sobic010G164100 Sobic002G302300 Sobic002G302300 Sobic009G191801--Sobic002G302300 Sobic004G195900--Sobic004G111500 Sobic004G092700 Sobic004G092700 Sobic004G195900--Sobic004G092700 Sobic001G091000 Sobic001G091000 Sobic004G195900--Sobic001G091000 Sobic004G195900--Sobic009G115200 Sobic004G195900--Sobic001G241000 Sobic001G311200 Sobic001G311200 Sobic004G195900--Sobic001G311200 Sobic004G195900--Sobic004G083600 Sobic002G317500 Sobic002G317500 Sobic004G195900--Sobic002G317500 Sobic004G195900--Sobic009G209400 Sobic001G241000--Sobic004G111500 Sobic001G241000--Sobic004G195900 Sobic001G241000--Sobic001G091000 Sobic001G241000--Sobic009G115200 Sobic003G302466 Sobic003G302466 Sobic001G241000--Sobic003G302466 Sobic001G241000--Sobic004G083600 Sobic001G090900 Sobic001G090900 Sobic001G241000--Sobic001G090900 Sobic001G241000--Sobic009G227300 Sobic002G282800 Sobic002G282800 Sobic001G241000--Sobic002G282800 Sobic004G111500--Sobic001G091000 Sobic004G111500--Sobic001G311200 Sobic004G111500--Sobic004G195900 Sobic007G004900 Sobic007G004900 Sobic004G111500--Sobic007G004900 Sobic004G111500--Sobic001G241000 Sobic004G111500--Sobic004G092700 Sobic002G243100 Sobic002G243100 Sobic004G111500--Sobic002G243100 Sobic004G111500--Sobic001G090900 Sobic006G084100 Sobic006G084100 Sobic004G111500--Sobic006G084100 Sobic001G088600--Sobic002G111400 Sobic001G088600--Sobic009G209400 Sobic001G088600--Sobic002G302300 Sobic001G088600--Sobic009G191801 Sobic007G075250 Sobic007G075250 Sobic001G088600--Sobic007G075250 Sobic001G088600--Sobic002G317500 Sobic001G088600--Sobic006G121700 Sobic001G088600--Sobic001G243666 Sobic010G106601 Sobic010G106601 Sobic001G088600--Sobic010G106601 Sobic009G227300--Sobic009G115200 Sobic009G227300--Sobic001G241000 Sobic009G227300--Sobic004G083600 Sobic009G227300--Sobic009G191801 Sobic009G227300--Sobic004G195900 Sobic010G069700 Sobic010G069700 Sobic009G227300--Sobic010G069700 Sobic001G203100 Sobic001G203100 Sobic009G227300--Sobic001G203100 Sobic009G227300--Sobic002G282800 Sobic007G172800 Sobic007G172800 Sobic009G227300--Sobic007G172800 Sobic002G111400--Sobic001G088600 Sobic002G111400--Sobic009G209400 Sobic002G111400--Sobic002G317500 Sobic002G111400--Sobic002G302300 Sobic002G111400--Sobic007G075250 Sobic002G111400--Sobic009G191801 Sobic002G111400--Sobic010G106601 Sobic002G111400--Sobic006G121700 Sobic001G017500 Sobic001G017500 Sobic002G111400--Sobic001G017500 Sobic006G093500--Sobic001G088600 Sobic006G093500--Sobic009G209400 Sobic006G093500--Sobic002G317500 Sobic006G093500--Sobic009G115200 Sobic006G093500--Sobic002G111400 Sobic006G093500--Sobic009G191801 Sobic006G093500--Sobic004G092700 Sobic006G093500--Sobic004G195900 Sobic006G093500--Sobic002G302300
Octagon: transcription factors


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