Gene annotation
Transcriptome id Sobic.004G111500.1
Synonym Sb04g009130
Functional annotation Up-reguralion under drought (PubMedID : 24916767)
late embryogenesis abundant domain-containing protein, putative, expressed
UniProt C5XZ48
Pfam -
Panther DB PTHR23241 PTHR23241:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G53040 : late embryogenesis abundant protein, putative / LEA protein, putative
RAP-DB (Rice) LOC_Os02g15250.1 : late embryogenesis abundant domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a019945
Brachypodium PNT66272
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G111500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G091000 late embryogenesis abundant protein D-34, putative, expressed -
2 Sobic.001G311200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
3 Sobic.004G195900 late embryogenesis abundant protein D-34, putative, expressed -
4 Sobic.007G004900 expressed protein -
5 Sobic.001G241000 late embryogenesis abundant protein D-34, putative, expressed -
6 Sobic.004G092700 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
7 Sobic.002G243100 expressed protein -
8 Sobic.001G090900 late embryogenesis abundant protein D-34, putative, expressed -
9 Sobic.006G084100 expressed protein -
10 Sobic.009G115200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@harpin-induced protein 1 domain containing protein, expressed -
11 Sobic.001G515700 expressed protein -
12 Sobic.004G196900 - -
13 Sobic.004G083600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
14 Sobic.003G270200 dehydrin family protein, expressed -
15 Sobic.001G495850 - -
16 Sobic.002G317500 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
17 Sobic.001G144900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@cupin domain containing protein, expressed -
18 Sobic.006G093500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
19 Sobic.001G388100 Up-reguralion under drought(PubMedID : 24916767)@Late embryogenesis abundant protein 1("PubMedID : 26759170,PubMedID : 24597475")@late embryogenesis abundant protein 1, putative, expressed -
20 Sobic.008G102050 - -


Gene co-expression network
sample Sobic004G111500 Sobic004G111500 Sobic001G091000 Sobic001G091000 Sobic004G111500--Sobic001G091000 Sobic001G311200 Sobic001G311200 Sobic004G111500--Sobic001G311200 Sobic004G195900 Sobic004G195900 Sobic004G111500--Sobic004G195900 Sobic007G004900 Sobic007G004900 Sobic004G111500--Sobic007G004900 Sobic001G241000 Sobic001G241000 Sobic004G111500--Sobic001G241000 Sobic004G092700 Sobic004G092700 Sobic004G111500--Sobic004G092700 Sobic002G243100 Sobic002G243100 Sobic004G111500--Sobic002G243100 Sobic001G090900 Sobic001G090900 Sobic004G111500--Sobic001G090900 Sobic006G084100 Sobic006G084100 Sobic004G111500--Sobic006G084100 Sobic001G091000--Sobic004G111500 Sobic001G091000--Sobic001G311200 Sobic001G091000--Sobic007G004900 Sobic001G091000--Sobic004G195900 Sobic001G091000--Sobic001G241000 Sobic001G091000--Sobic004G092700 Sobic001G091000--Sobic002G243100 Sobic001G091000--Sobic006G084100 Sobic004G196900 Sobic004G196900 Sobic001G091000--Sobic004G196900 Sobic001G311200--Sobic007G004900 Sobic001G311200--Sobic004G111500 Sobic001G311200--Sobic001G091000 Sobic001G311200--Sobic006G084100 Sobic001G144900 Sobic001G144900 Sobic001G311200--Sobic001G144900 Sobic001G311200--Sobic004G195900 Sobic001G311200--Sobic004G092700 Sobic001G311200--Sobic002G243100 Sobic006G278950 Sobic006G278950 Sobic001G311200--Sobic006G278950 Sobic004G195900--Sobic004G111500 Sobic004G195900--Sobic004G092700 Sobic004G195900--Sobic001G091000 Sobic009G115200 Sobic009G115200 Sobic004G195900--Sobic009G115200 Sobic004G195900--Sobic001G241000 Sobic004G195900--Sobic001G311200 Sobic004G083600 Sobic004G083600 Sobic004G195900--Sobic004G083600 Sobic002G317500 Sobic002G317500 Sobic004G195900--Sobic002G317500 Sobic009G209400 Sobic009G209400 Sobic004G195900--Sobic009G209400 Sobic007G004900--Sobic001G311200 Sobic007G004900--Sobic004G111500 Sobic002G383500 Sobic002G383500 Sobic007G004900--Sobic002G383500 Sobic007G004900--Sobic001G091000 Sobic007G004900--Sobic006G084100 Sobic007G004900--Sobic001G144900 Sobic007G004900--Sobic004G092700 Sobic007G004900--Sobic002G243100 Sobic002G231100 Sobic002G231100 Sobic007G004900--Sobic002G231100 Sobic001G241000--Sobic004G111500 Sobic001G241000--Sobic004G195900 Sobic001G241000--Sobic001G091000 Sobic001G241000--Sobic009G115200 Sobic003G302466 Sobic003G302466 Sobic001G241000--Sobic003G302466 Sobic001G241000--Sobic004G083600 Sobic001G241000--Sobic001G090900 Sobic009G227300 Sobic009G227300 Sobic001G241000--Sobic009G227300 Sobic002G282800 Sobic002G282800 Sobic001G241000--Sobic002G282800 Sobic004G092700--Sobic002G317500 Sobic003G270200 Sobic003G270200 Sobic004G092700--Sobic003G270200 Sobic010G041900 Sobic010G041900 Sobic004G092700--Sobic010G041900 Sobic003G130400 Sobic003G130400 Sobic004G092700--Sobic003G130400 Sobic004G092700--Sobic009G209400 Sobic002G185100 Sobic002G185100 Sobic004G092700--Sobic002G185100 Sobic004G092700--Sobic004G195900 Sobic002G111400 Sobic002G111400 Sobic004G092700--Sobic002G111400 Sobic007G162700 Sobic007G162700 Sobic004G092700--Sobic007G162700 Sobic002G243100--Sobic004G196900 Sobic001G495850 Sobic001G495850 Sobic002G243100--Sobic001G495850 Sobic001G388100 Sobic001G388100 Sobic002G243100--Sobic001G388100 Sobic003G241400 Sobic003G241400 Sobic002G243100--Sobic003G241400 Sobic001G515700 Sobic001G515700 Sobic002G243100--Sobic001G515700 Sobic007G088300 Sobic007G088300 Sobic002G243100--Sobic007G088300 Sobic009G150800 Sobic009G150800 Sobic002G243100--Sobic009G150800 Sobic002G089300 Sobic002G089300 Sobic002G243100--Sobic002G089300 Sobic002G243100--Sobic001G090900 Sobic009G185000 Sobic009G185000 Sobic001G090900--Sobic009G185000 Sobic001G090900--Sobic002G282800 Sobic001G090900--Sobic004G196900 Sobic001G090900--Sobic002G243100 Sobic005G102600 Sobic005G102600 Sobic001G090900--Sobic005G102600 Sobic001G090900--Sobic002G089300 Sobic006G229400 Sobic006G229400 Sobic001G090900--Sobic006G229400 Sobic005G029300 Sobic005G029300 Sobic001G090900--Sobic005G029300 Sobic001G090900--Sobic004G111500 Sobic006G084100--Sobic001G388100 Sobic006G084100--Sobic006G278950 Sobic001G211000 Sobic001G211000 Sobic006G084100--Sobic001G211000 Sobic006G084100--Sobic001G495850 Sobic003G242600 Sobic003G242600 Sobic006G084100--Sobic003G242600 Sobic010G090800 Sobic010G090800 Sobic006G084100--Sobic010G090800 Sobic006G084100--Sobic001G311200 Sobic006G084100--Sobic009G150800 Sobic006G084100--Sobic007G004900
Octagon: transcription factors


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