Gene annotation
Transcriptome id Sobic.002G138000.1
Synonym Sb02g012500
Functional annotation Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
UniProt C5X6L4
Pfam PF00125
Panther DB PTHR23428 PTHR23428:SF50
NCBI CDD KOG1744; Histone H2B
KEGG Orthology K11252; histone H2B
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G08170 : Histone superfamily protein
RAP-DB (Rice) LOC_Os09g39730.1 : Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a013485
Brachypodium KQJ91633
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G383500 expressed protein -
2 Sobic.002G231100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZF-HD protein dimerisation region containing protein, expressed -
3 Sobic.001G144900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@cupin domain containing protein, expressed -
4 Sobic.008G102050 - -
5 Sobic.006G084100 expressed protein -
6 Sobic.007G197500 expressed protein -
7 Sobic.007G004900 expressed protein -
8 Sobic.002G356300 expressed protein -
9 Sobic.008G112550 - -
10 Sobic.006G210500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, group 3, putative, expressed -
11 Sobic.005G167650 - -
12 Sobic.006G278950 - -
13 Sobic.001G497700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed -
14 Sobic.009G104600 small hydrophilic plant seed protein, putative, expressed -
15 Sobic.001G211000 RIPER3 - Ripening-related family protein precursor, putative, expressed -
16 Sobic.001G311200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
17 Sobic.002G143300 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
18 Sobic.001G388100 Up-reguralion under drought(PubMedID : 24916767)@Late embryogenesis abundant protein 1("PubMedID : 26759170,PubMedID : 24597475")@late embryogenesis abundant protein 1, putative, expressed -
19 Sobic.010G007800 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed -
20 Sobic.003G270200 dehydrin family protein, expressed -


Gene co-expression network
sample Sobic002G138000 Sobic002G138000 Sobic002G383500 Sobic002G383500 Sobic002G138000--Sobic002G383500 Sobic002G231100 Sobic002G231100 Sobic002G138000--Sobic002G231100 Sobic001G144900 Sobic001G144900 Sobic002G138000--Sobic001G144900 Sobic008G102050 Sobic008G102050 Sobic002G138000--Sobic008G102050 Sobic006G084100 Sobic006G084100 Sobic002G138000--Sobic006G084100 Sobic007G197500 Sobic007G197500 Sobic002G138000--Sobic007G197500 Sobic007G004900 Sobic007G004900 Sobic002G138000--Sobic007G004900 Sobic002G356300 Sobic002G356300 Sobic002G138000--Sobic002G356300 Sobic008G112550 Sobic008G112550 Sobic002G138000--Sobic008G112550 Sobic002G383500--Sobic007G004900 Sobic002G143300 Sobic002G143300 Sobic002G383500--Sobic002G143300 Sobic002G383500--Sobic001G144900 Sobic002G383500--Sobic006G084100 Sobic002G383500--Sobic002G138000 Sobic002G383500--Sobic002G231100 Sobic009G026850 Sobic009G026850 Sobic002G383500--Sobic009G026850 Sobic001G497700 Sobic001G497700 Sobic002G383500--Sobic001G497700 Sobic001G311200 Sobic001G311200 Sobic002G383500--Sobic001G311200 Sobic002G231100--Sobic008G102050 Sobic002G231100--Sobic002G138000 Sobic002G231100--Sobic001G144900 Sobic002G231100--Sobic006G084100 Sobic002G231100--Sobic002G383500 Sobic002G231100--Sobic007G004900 Sobic002G231100--Sobic001G311200 Sobic001G091000 Sobic001G091000 Sobic002G231100--Sobic001G091000 Sobic001G388100 Sobic001G388100 Sobic002G231100--Sobic001G388100 Sobic001G144900--Sobic001G497700 Sobic009G104600 Sobic009G104600 Sobic001G144900--Sobic009G104600 Sobic005G167650 Sobic005G167650 Sobic001G144900--Sobic005G167650 Sobic010G007800 Sobic010G007800 Sobic001G144900--Sobic010G007800 Sobic002G185100 Sobic002G185100 Sobic001G144900--Sobic002G185100 Sobic009G104500 Sobic009G104500 Sobic001G144900--Sobic009G104500 Sobic001G144900--Sobic002G383500 Sobic004G091600 Sobic004G091600 Sobic001G144900--Sobic004G091600 Sobic001G144900--Sobic007G004900 Sobic001G495850 Sobic001G495850 Sobic008G102050--Sobic001G495850 Sobic008G102050--Sobic001G388100 Sobic008G102050--Sobic002G231100 Sobic008G102050--Sobic006G084100 Sobic009G150800 Sobic009G150800 Sobic008G102050--Sobic009G150800 Sobic002G240300 Sobic002G240300 Sobic008G102050--Sobic002G240300 Sobic008G102050--Sobic002G138000 Sobic002G416300 Sobic002G416300 Sobic008G102050--Sobic002G416300 Sobic003G241400 Sobic003G241400 Sobic008G102050--Sobic003G241400 Sobic006G084100--Sobic001G388100 Sobic006G278950 Sobic006G278950 Sobic006G084100--Sobic006G278950 Sobic001G211000 Sobic001G211000 Sobic006G084100--Sobic001G211000 Sobic006G084100--Sobic001G495850 Sobic003G242600 Sobic003G242600 Sobic006G084100--Sobic003G242600 Sobic010G090800 Sobic010G090800 Sobic006G084100--Sobic010G090800 Sobic006G084100--Sobic001G311200 Sobic006G084100--Sobic009G150800 Sobic006G084100--Sobic007G004900 Sobic010G256100 Sobic010G256100 Sobic007G197500--Sobic010G256100 Sobic001G498900 Sobic001G498900 Sobic007G197500--Sobic001G498900 Sobic005G165700 Sobic005G165700 Sobic007G197500--Sobic005G165700 Sobic002G374500 Sobic002G374500 Sobic007G197500--Sobic002G374500 Sobic007G008500 Sobic007G008500 Sobic007G197500--Sobic007G008500 Sobic007G197500--Sobic004G091600 Sobic007G197500--Sobic010G007800 Sobic001G164800 Sobic001G164800 Sobic007G197500--Sobic001G164800 Sobic007G197500--Sobic005G167650 Sobic007G004900--Sobic001G311200 Sobic004G111500 Sobic004G111500 Sobic007G004900--Sobic004G111500 Sobic007G004900--Sobic002G383500 Sobic007G004900--Sobic001G091000 Sobic007G004900--Sobic006G084100 Sobic007G004900--Sobic001G144900 Sobic004G092700 Sobic004G092700 Sobic007G004900--Sobic004G092700 Sobic002G243100 Sobic002G243100 Sobic007G004900--Sobic002G243100 Sobic007G004900--Sobic002G231100 Sobic002G356300--Sobic009G104600 Sobic002G356300--Sobic002G185100 Sobic002G356300--Sobic001G144900 Sobic002G356300--Sobic001G497700 Sobic002G356300--Sobic010G007800 Sobic007G162700 Sobic007G162700 Sobic002G356300--Sobic007G162700 Sobic002G356300--Sobic004G092700 Sobic010G269950 Sobic010G269950 Sobic002G356300--Sobic010G269950 Sobic002G356300--Sobic009G104500 Sobic008G112550--Sobic001G144900 Sobic008G112550--Sobic009G026850 Sobic008G112550--Sobic005G167650 Sobic008G112550--Sobic001G497700 Sobic008G112550--Sobic009G104600 Sobic001G499800 Sobic001G499800 Sobic008G112550--Sobic001G499800 Sobic008G112550--Sobic002G383500 Sobic003G300250 Sobic003G300250 Sobic008G112550--Sobic003G300250 Sobic006G219950 Sobic006G219950 Sobic008G112550--Sobic006G219950
Octagon: transcription factors


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