Gene annotation
| Transcriptome id | Sobic.002G356300.1 |
|---|---|
| Synonym | Sb02g037770 |
| Functional annotation | expressed protein |
| UniProt | C5XD17 |
| Pfam | - |
| Panther DB | PTHR33595 PTHR33595:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G27461 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os07g39700.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a048546 , Zm00025a015039 |
| Brachypodium | KQK15487 , KQK15486 |
| Barley | HORVU2Hr1G035870.1 , HORVU2Hr1G035870.3 , HORVU2Hr1G035870.2 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G356300 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 2 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 3 | Sobic.001G144900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@cupin domain containing protein, expressed | - |
| 4 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 5 | Sobic.010G007800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed | - |
| 6 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 7 | Sobic.004G092700 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 8 | Sobic.010G269950 | - | - |
| 9 | Sobic.009G104500 | small hydrophilic plant seed protein, putative, expressed | - |
| 10 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 11 | Sobic.005G054900 | acyl-CoA synthetase protein, putative, expressed | K01897: ACSL, long-chain acyl-CoA synthetase |
| 12 | Sobic.006G143600 | similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed | K17991: peroxygenase |
| 13 | Sobic.005G167650 | - | - |
| 14 | Sobic.002G138000 | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed | K11252: histone H2B |
| 15 | Sobic.003G270200 | dehydrin family protein, expressed | - |
| 16 | Sobic.004G091600 | ethylene receptor, putative, expressed | K14509: ETR, ethylene receptor |
| 17 | Sobic.010G256100 | LTPL154 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 18 | Sobic.001G126900 | oleosin, putative, expressed | - |
| 19 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 20 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
