Gene annotation
Transcriptome id Sobic.005G054900.3,Sobic.005G054900.2
Synonym LACS9, Sb05g004500
Functional annotation acyl-CoA synthetase protein, putative, expressed
UniProt A0A1Z5RH07
Pfam PF00501
Panther DB PTHR24096 PTHR24096:SF181
NCBI CDD -
KEGG Orthology K01897; ACSL, long-chain acyl-CoA synthetase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G77590 : long chain acyl-CoA synthetase 9
RAP-DB (Rice) LOC_Os12g07110.2,LOC_Os12g07110.1 : acyl-CoA synthetase protein, putative, expressed
MaizeGDB (Corn) Zm00025a033972 , Zm00025a054026
Brachypodium KQJ89218 , KQJ89219 , KQJ92081 , KQJ89221 , KQJ89220 , KQJ89222
Barley HORVU5Hr1G036460.1 , HORVU5Hr1G036460.2 , HORVU5Hr1G036460.3 , HORVU4Hr1G019780.12 , HORVU4Hr1G019780.13 , HORVU4Hr1G019780.11 , HORVU4Hr1G019780.10 , HORVU4Hr1G019780.9 , HORVU4Hr1G019780.8 , HORVU4Hr1G019780.3 , HORVU4Hr1G019780.2 , HORVU4Hr1G019780.1 , HORVU4Hr1G019780.7 , HORVU4Hr1G019780.6 , HORVU4Hr1G019780.5 , HORVU4Hr1G019780.4
Wheat TraesCS4D02G108300 , TraesCS5B02G118000 , TraesCS5D02G129800 , TraesCS4B02G110600 , TraesCS4A02G207000 , TraesCS5A02G117700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G164800 B3 DNA binding domain containing protein, expressed -
2 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
3 Sobic.007G008500 basic helix-loop-helix family protein, putative, expressed -
4 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
5 Sobic.010G110100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"A transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659933)@transcription factor, putative, expressed K14431: transcription factor TGA
6 Sobic.003G398200 B3 DNA binding domain containing protein, expressed -
7 Sobic.002G184700 expressed protein -
8 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
9 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -
11 Sobic.010G256100 LTPL154 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
12 Sobic.004G091600 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
13 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
14 Sobic.001G344300 - -
15 Sobic.006G167700 oleosin, putative, expressed -
16 Sobic.007G025600 amino acid transporter, putative, expressed -
17 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
18 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
19 Sobic.006G248000 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
20 Sobic.001G534200 - -


Gene co-expression network
sample Sobic005G054900 Sobic005G054900 Sobic001G164800 Sobic001G164800 Sobic005G054900--Sobic001G164800 Sobic002G046000 Sobic002G046000 Sobic005G054900--Sobic002G046000 Sobic007G008500 Sobic007G008500 Sobic005G054900--Sobic007G008500 Sobic001G166900 Sobic001G166900 Sobic005G054900--Sobic001G166900 Sobic010G110100 Sobic010G110100 Sobic005G054900--Sobic010G110100 Sobic003G398200 Sobic003G398200 Sobic005G054900--Sobic003G398200 Sobic002G184700 Sobic002G184700 Sobic005G054900--Sobic002G184700 Sobic009G103800 Sobic009G103800 Sobic005G054900--Sobic009G103800 Sobic004G349550 Sobic004G349550 Sobic005G054900--Sobic004G349550 Sobic001G164800--Sobic005G054900 Sobic001G164800--Sobic007G008500 Sobic001G164800--Sobic002G046000 Sobic001G164800--Sobic004G349550 Sobic001G164800--Sobic001G166900 Sobic002G327600 Sobic002G327600 Sobic001G164800--Sobic002G327600 Sobic006G248000 Sobic006G248000 Sobic001G164800--Sobic006G248000 Sobic003G443400 Sobic003G443400 Sobic001G164800--Sobic003G443400 Sobic010G256100 Sobic010G256100 Sobic001G164800--Sobic010G256100 Sobic002G046000--Sobic002G184700 Sobic006G167700 Sobic006G167700 Sobic002G046000--Sobic006G167700 Sobic003G372600 Sobic003G372600 Sobic002G046000--Sobic003G372600 Sobic001G344300 Sobic001G344300 Sobic002G046000--Sobic001G344300 Sobic002G046000--Sobic009G103800 Sobic002G046000--Sobic001G166900 Sobic002G046000--Sobic006G248000 Sobic002G211300 Sobic002G211300 Sobic002G046000--Sobic002G211300 Sobic010G198900 Sobic010G198900 Sobic002G046000--Sobic010G198900 Sobic007G008500--Sobic001G166900 Sobic007G008500--Sobic006G248000 Sobic007G008500--Sobic004G349550 Sobic007G008500--Sobic002G046000 Sobic007G008500--Sobic010G198900 Sobic007G008500--Sobic006G167700 Sobic007G008500--Sobic009G103800 Sobic007G008500--Sobic002G184700 Sobic007G025600 Sobic007G025600 Sobic007G008500--Sobic007G025600 Sobic001G166900--Sobic006G167700 Sobic001G166900--Sobic002G184700 Sobic001G166900--Sobic006G248000 Sobic001G166900--Sobic002G046000 Sobic001G166900--Sobic009G103800 Sobic001G166900--Sobic001G344300 Sobic001G166900--Sobic003G372600 Sobic001G166900--Sobic002G211300 Sobic001G166900--Sobic010G198900 Sobic010G110100--Sobic004G349550 Sobic010G110100--Sobic007G008500 Sobic010G110100--Sobic002G046000 Sobic010G110100--Sobic009G103800 Sobic010G110100--Sobic001G344300 Sobic010G110100--Sobic002G184700 Sobic008G149300 Sobic008G149300 Sobic010G110100--Sobic008G149300 Sobic010G110100--Sobic006G167700 Sobic010G110100--Sobic001G166900 Sobic009G250500 Sobic009G250500 Sobic003G398200--Sobic009G250500 Sobic010G131500 Sobic010G131500 Sobic003G398200--Sobic010G131500 Sobic006G248100 Sobic006G248100 Sobic003G398200--Sobic006G248100 Sobic001G058800 Sobic001G058800 Sobic003G398200--Sobic001G058800 Sobic003G437400 Sobic003G437400 Sobic003G398200--Sobic003G437400 Sobic001G208500 Sobic001G208500 Sobic003G398200--Sobic001G208500 Sobic003G051400 Sobic003G051400 Sobic003G398200--Sobic003G051400 Sobic003G398200--Sobic003G372600 Sobic003G398200--Sobic010G198900 Sobic002G184700--Sobic009G103800 Sobic002G184700--Sobic006G167700 Sobic002G184700--Sobic001G344300 Sobic002G184700--Sobic002G046000 Sobic002G184700--Sobic003G372600 Sobic002G184700--Sobic001G166900 Sobic002G184700--Sobic002G211300 Sobic002G184700--Sobic001G208500 Sobic002G184700--Sobic004G349550 Sobic009G103800--Sobic002G184700 Sobic009G103800--Sobic001G344300 Sobic009G103800--Sobic006G167700 Sobic009G103800--Sobic002G046000 Sobic009G103800--Sobic004G349550 Sobic009G103800--Sobic001G166900 Sobic009G103800--Sobic007G025600 Sobic009G103800--Sobic003G372600 Sobic001G534200 Sobic001G534200 Sobic009G103800--Sobic001G534200 Sobic004G349550--Sobic001G344300 Sobic004G349550--Sobic008G149300 Sobic004G349550--Sobic009G103800 Sobic004G349550--Sobic006G167700 Sobic005G184700 Sobic005G184700 Sobic004G349550--Sobic005G184700 Sobic005G184800 Sobic005G184800 Sobic004G349550--Sobic005G184800 Sobic001G165600 Sobic001G165600 Sobic004G349550--Sobic001G165600 Sobic004G349550--Sobic002G184700 Sobic001G122600 Sobic001G122600 Sobic004G349550--Sobic001G122600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.