Gene annotation
| Transcriptome id | Sobic.002G143300.1 |
|---|---|
| Synonym | Sb02g013190, |
| Functional annotation | Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) expressed protein |
| UniProt | A0A1B6QB73 |
| Pfam | - |
| Panther DB | PTHR33919 PTHR33919:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G31830 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os09g04100.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a013449 |
| Brachypodium | KQJ86944 |
| Barley | HORVU5Hr1G050950.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.002G143300 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G413200 | glucosyltransferase, putative, expressed | - |
| 2 | Sobic.010G007800 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant group 1, putative, expressed | - |
| 3 | Sobic.007G153600 | similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
| 4 | Sobic.002G383500 | expressed protein | - |
| 5 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 6 | Sobic.001G497700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@late embryogenesis abundant protein D-34, putative, expressed | - |
| 7 | Sobic.009G104600 | small hydrophilic plant seed protein, putative, expressed | - |
| 8 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 9 | Sobic.005G167650 | - | - |
| 10 | Sobic.001G144900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@cupin domain containing protein, expressed | - |
| 11 | Sobic.009G104500 | small hydrophilic plant seed protein, putative, expressed | - |
| 12 | Sobic.004G091600 | ethylene receptor, putative, expressed | K14509: ETR, ethylene receptor |
| 13 | Sobic.005G138500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 14 | Sobic.005G165700 | AMBP1 - Antimicrobial peptide MBP-1 family protein precursor, expressed | - |
| 15 | Sobic.004G114600 | expressed protein | - |
| 16 | Sobic.002G185100 | succinate dehydrogenase and fumarate reductase iron-sulfur protein, expressed | K00235: SDHB, succinate dehydrogenase (ubiquinone) iron-sulfur subunit |
| 17 | Sobic.002G062100 | exostosin family protein, putative, expressed | - |
| 18 | Sobic.003G144500 | Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 19 | Sobic.010G041900 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dehydrin, putative, expressed | - |
| 20 | Sobic.007G218500 | (50.9% identity with SbCCoAOMT/68.5% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed | K18883: tricin synthase |
Gene co-expression network
Octagon: transcription factors
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