Gene annotation
| Transcriptome id | Sobic.005G138500.1 |
|---|---|
| Synonym | Sb05g020290 |
| Functional annotation | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543) expressed protein |
| UniProt | C5Y3Q9 |
| Pfam | - |
| Panther DB | PTHR33919:SF2 PTHR33919 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G07330 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os11g32890.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a015699 |
| Brachypodium | PNT63541 |
| Barley | HORVU6Hr1G073540.1 |
| Wheat | TraesCS6B02G325000 , TraesCS6A02G295000 , TraesCS6D02G275600 |
| Populus | - |
JBrowse
| Sobic.005G138500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G269501 | - | - |
| 2 | Sobic.001G396900 | expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 3 | Sobic.009G171400 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 4 | Sobic.002G413200 | glucosyltransferase, putative, expressed | - |
| 5 | Sobic.004G114600 | expressed protein | - |
| 6 | Sobic.006G050600 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 7 | Sobic.002G143300 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 8 | Sobic.006G034300 | Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
| 9 | Sobic.004G243300 | expressed protein | - |
| 10 | Sobic.003G011000 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@AAA-type ATPase family protein, putative, expressed | - |
| 11 | Sobic.002G151200 | seed maturation protein LEA 4, putative, expressed | - |
| 12 | Sobic.007G153600 | similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
| 13 | Sobic.005G165800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SEY1, putative, expressed | - |
| 14 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 15 | Sobic.010G133000 | late embryogenesis abundant group 1, putative, expressed | - |
| 16 | Sobic.004G047900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 17 | Sobic.001G307000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 18 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 19 | Sobic.003G130400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@embryonic protein DC-8, putative, expressed | - |
| 20 | Sobic.006G114700 | Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
Gene co-expression network
Octagon: transcription factors
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