Gene annotation
Transcriptome id Sobic.003G011000.1
Synonym Sb03g001130,
Functional annotation Up-reguralion under drought (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
AAA-type ATPase family protein, putative, expressed
UniProt C5XKA2
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF77
NCBI CDD KOG0737; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G64110 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g12660.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a036729 , Zm00025a022845 , Zm00025a035966
Brachypodium KQK03379 , PNT70194 , KQK03381 , KQK03380
Barley HORVU3Hr1G030770.18 , HORVU3Hr1G030770.19 , HORVU3Hr1G030770.16 , HORVU3Hr1G030770.17 , HORVU3Hr1G030770.14 , HORVU3Hr1G030770.15 , HORVU3Hr1G030770.12 , HORVU3Hr1G030770.13 , HORVU3Hr1G030770.10 , HORVU3Hr1G030770.11 , HORVU3Hr1G030770.8 , HORVU3Hr1G030770.9 , HORVU3Hr1G030770.4 , HORVU3Hr1G030770.5 , HORVU3Hr1G030770.6 , HORVU3Hr1G030770.7 , HORVU3Hr1G030770.1 , HORVU3Hr1G030770.2 , HORVU3Hr1G030770.3 , HORVU3Hr1G030770.25 , HORVU3Hr1G030770.24 , HORVU3Hr1G030770.23 , HORVU3Hr1G030770.21 , HORVU3Hr1G030770.20
Wheat TraesCS3D02G159200 , TraesCS3D02G159200 , TraesCS3B02G178200 , TraesCS3B02G178200 , TraesCS3B02G178200 , TraesCS3A02G151300 , TraesCS3A02G151300
Populus PNT09252 , PNT09253 , PNT09254 , PNT09255


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G034300 Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
2 Sobic.009G171400 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
3 Sobic.004G114600 expressed protein -
4 Sobic.005G138500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G396900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
6 Sobic.005G165800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SEY1, putative, expressed -
7 Sobic.004G058600 aldehyde dehydrogenase, putative, expressed K17761: succinate-semialdehyde dehydrogenase, mitochondrial
8 Sobic.003G292400 NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
9 Sobic.010G101300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit
10 Sobic.006G050600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.002G413200 glucosyltransferase, putative, expressed -
12 Sobic.006G114700 Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
13 Sobic.004G298000 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
14 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
15 Sobic.001G307000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.004G243300 expressed protein -
17 Sobic.001G044300 transcription factor, putative, expressed K09060: plant G-box-binding factor
18 Sobic.006G208000 DNA repair ATPase-related, putative, expressed -
19 Sobic.003G427300 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
20 Sobic.003G194400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote


Gene co-expression network
sample Sobic003G011000 Sobic003G011000 Sobic006G034300 Sobic006G034300 Sobic003G011000--Sobic006G034300 Sobic009G171400 Sobic009G171400 Sobic003G011000--Sobic009G171400 Sobic004G114600 Sobic004G114600 Sobic003G011000--Sobic004G114600 Sobic005G138500 Sobic005G138500 Sobic003G011000--Sobic005G138500 Sobic001G396900 Sobic001G396900 Sobic003G011000--Sobic001G396900 Sobic005G165800 Sobic005G165800 Sobic003G011000--Sobic005G165800 Sobic004G058600 Sobic004G058600 Sobic003G011000--Sobic004G058600 Sobic003G292400 Sobic003G292400 Sobic003G011000--Sobic003G292400 Sobic010G101300 Sobic010G101300 Sobic003G011000--Sobic010G101300 Sobic006G034300--Sobic003G011000 Sobic006G034300--Sobic001G396900 Sobic006G034300--Sobic004G114600 Sobic006G034300--Sobic005G165800 Sobic006G034300--Sobic009G171400 Sobic006G034300--Sobic005G138500 Sobic002G413200 Sobic002G413200 Sobic006G034300--Sobic002G413200 Sobic006G050600 Sobic006G050600 Sobic006G034300--Sobic006G050600 Sobic006G208000 Sobic006G208000 Sobic006G034300--Sobic006G208000 Sobic009G171400--Sobic010G101300 Sobic009G171400--Sobic004G114600 Sobic009G171400--Sobic005G138500 Sobic009G171400--Sobic001G396900 Sobic009G171400--Sobic003G292400 Sobic004G243300 Sobic004G243300 Sobic009G171400--Sobic004G243300 Sobic009G171400--Sobic006G034300 Sobic006G114700 Sobic006G114700 Sobic009G171400--Sobic006G114700 Sobic009G171400--Sobic003G011000 Sobic004G114600--Sobic002G413200 Sobic004G114600--Sobic001G396900 Sobic004G114600--Sobic006G208000 Sobic004G114600--Sobic009G171400 Sobic004G114600--Sobic006G034300 Sobic002G062100 Sobic002G062100 Sobic004G114600--Sobic002G062100 Sobic009G025500 Sobic009G025500 Sobic004G114600--Sobic009G025500 Sobic004G114600--Sobic006G050600 Sobic004G114600--Sobic005G165800 Sobic006G269501 Sobic006G269501 Sobic005G138500--Sobic006G269501 Sobic005G138500--Sobic001G396900 Sobic005G138500--Sobic009G171400 Sobic005G138500--Sobic002G413200 Sobic005G138500--Sobic004G114600 Sobic005G138500--Sobic006G050600 Sobic002G143300 Sobic002G143300 Sobic005G138500--Sobic002G143300 Sobic005G138500--Sobic006G034300 Sobic005G138500--Sobic004G243300 Sobic001G396900--Sobic005G138500 Sobic001G396900--Sobic004G114600 Sobic001G396900--Sobic006G034300 Sobic001G396900--Sobic005G165800 Sobic001G396900--Sobic009G171400 Sobic001G396900--Sobic002G413200 Sobic001G396900--Sobic003G011000 Sobic001G396900--Sobic006G050600 Sobic007G153600 Sobic007G153600 Sobic001G396900--Sobic007G153600 Sobic005G165800--Sobic001G396900 Sobic005G165800--Sobic004G114600 Sobic005G165800--Sobic006G208000 Sobic005G165800--Sobic006G034300 Sobic005G165800--Sobic002G413200 Sobic004G281700 Sobic004G281700 Sobic005G165800--Sobic004G281700 Sobic001G044300 Sobic001G044300 Sobic005G165800--Sobic001G044300 Sobic003G419500 Sobic003G419500 Sobic005G165800--Sobic003G419500 Sobic010G131500 Sobic010G131500 Sobic005G165800--Sobic010G131500 Sobic004G058600--Sobic003G011000 Sobic010G024600 Sobic010G024600 Sobic004G058600--Sobic010G024600 Sobic001G508200 Sobic001G508200 Sobic004G058600--Sobic001G508200 Sobic004G066500 Sobic004G066500 Sobic004G058600--Sobic004G066500 Sobic004G033200 Sobic004G033200 Sobic004G058600--Sobic004G033200 Sobic004G058600--Sobic006G034300 Sobic003G427300 Sobic003G427300 Sobic004G058600--Sobic003G427300 Sobic009G161900 Sobic009G161900 Sobic004G058600--Sobic009G161900 Sobic001G460100 Sobic001G460100 Sobic004G058600--Sobic001G460100 Sobic003G292400--Sobic010G101300 Sobic003G194400 Sobic003G194400 Sobic003G292400--Sobic003G194400 Sobic001G200700 Sobic001G200700 Sobic003G292400--Sobic001G200700 Sobic003G292400--Sobic006G114700 Sobic003G292400--Sobic004G243300 Sobic004G047900 Sobic004G047900 Sobic003G292400--Sobic004G047900 Sobic005G183200 Sobic005G183200 Sobic003G292400--Sobic005G183200 Sobic003G292400--Sobic009G171400 Sobic001G307000 Sobic001G307000 Sobic003G292400--Sobic001G307000 Sobic010G101300--Sobic003G292400 Sobic010G101300--Sobic003G194400 Sobic010G101300--Sobic006G114700 Sobic010G101300--Sobic004G243300 Sobic010G101300--Sobic009G171400 Sobic010G101300--Sobic001G200700 Sobic010G101300--Sobic005G183200 Sobic010G101300--Sobic004G047900 Sobic010G101300--Sobic001G307000
Octagon: transcription factors


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