Gene annotation
| Transcriptome id | Sobic.003G194400.1 |
|---|---|
| Synonym | Sb03g025770, ATHSFA2, HSFA2 |
| Functional annotation | HSF-type DNA-binding domain containing protein, expressed |
| UniProt | C5XNS0 |
| Pfam | PF00447 |
| Panther DB | PTHR10015 PTHR10015:SF195 |
| NCBI CDD | KOG0627; Heat shock transcription factor |
| KEGG Orthology | K09419; heat shock transcription factor, other eukaryote |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity |
Orthologs (automatic annotation)
| TAIR | AT2G26150 : heat shock transcription factor A2 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g39020.1 : HSF-type DNA-binding domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a028446 |
| Brachypodium | KQK08375 |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 2 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 3 | Sobic.001G200700 | expressed protein | - |
| 4 | Sobic.004G243300 | expressed protein | - |
| 5 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 6 | Sobic.005G183200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@14-3-3 protein, putative, expressed | K06630: 14-3-3 protein epsilon |
| 7 | Sobic.006G114700 | Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 8 | Sobic.001G307000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.004G047900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 10 | Sobic.009G171400 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 11 | Sobic.002G132500 | - | - |
| 12 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 13 | Sobic.001G466450 | - | - |
| 14 | Sobic.001G466450 | - | - |
| 15 | Sobic.001G466450 | - | - |
| 16 | Sobic.001G466450 | - | - |
| 17 | Sobic.001G466450 | - | - |
| 18 | Sobic.001G466450 | - | - |
| 19 | Sobic.001G466450 | - | - |
| 20 | Sobic.002G097000 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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