Gene annotation
| Transcriptome id | Sobic.003G292400.1 |
|---|---|
| Synonym | Sb03g034280, NADP-ME1, ATNADP-ME1,NADP-ME;NADP-ME;NADP-ME;SbNADP-ME |
| Functional annotation | NADP-dependent malic enzyme (PubMedID : 26186930) NADP-malic enzyme (PubMedID : 26904072) Up-reguralion under drought (PubMedID : 24916767) Up-reguralion under combine stress of drought and heat (PubMedID : 24916767) C4 carbon fixation (PubMedID : 28620409) NADP-dependent malic enzyme, putative, expressed |
| UniProt | C5XK02 |
| Pfam | PF00390 PF03949 |
| Panther DB | PTHR23406 PTHR23406:SF24 |
| NCBI CDD | - |
| KEGG Orthology | K00029; E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| Gene Ontology | GO:0004471; malate dehydrogenase (decarboxylating) (NAD+) activity |
Orthologs (automatic annotation)
| TAIR | AT2G19900 : NADP-malic enzyme 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g54030.1 : NADP-dependent malic enzyme, putative, expressed |
| MaizeGDB (Corn) | Zm00025a027741 , Zm00025a040068 , Zm00025a023064 |
| Brachypodium | PNT72829 , KQK09685 , PNT72830 , PNT72832 , PNT72831 |
| Barley | HORVU3Hr1G070850.8 , HORVU3Hr1G070850.5 , HORVU3Hr1G070850.7 , HORVU3Hr1G070850.1 , HORVU3Hr1G070850.3 |
| Wheat | TraesCS3B02G128000 , TraesCS3D02G110700 , TraesCS3A02G108900 , TraesCS3A02G275600 , TraesCS3A02G275600 , TraesCS3D02G275500 |
| Populus | - |
JBrowse
| Sobic.003G292400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 2 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 3 | Sobic.001G200700 | expressed protein | - |
| 4 | Sobic.006G114700 | Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 5 | Sobic.004G243300 | expressed protein | - |
| 6 | Sobic.004G047900 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed | - |
| 7 | Sobic.005G183200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@14-3-3 protein, putative, expressed | K06630: 14-3-3 protein epsilon |
| 8 | Sobic.009G171400 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 9 | Sobic.001G307000 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 10 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 11 | Sobic.003G011000 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@AAA-type ATPase family protein, putative, expressed | - |
| 12 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 13 | Sobic.006G034300 | Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
| 14 | Sobic.005G138500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 15 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 16 | Sobic.002G132500 | - | - |
| 17 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 18 | Sobic.001G466450 | - | - |
| 19 | Sobic.001G466450 | - | - |
| 20 | Sobic.001G466450 | - | - |
Gene co-expression network
Octagon: transcription factors
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