Gene annotation
| Transcriptome id | Sobic.005G183200.1 |
|---|---|
| Synonym | 14-3-3EPSILON, GF14EPSILON, GRF10, Sb05g024160 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) 14-3-3 protein, putative, expressed |
| UniProt | C5Y6A4 |
| Pfam | PF00244 |
| Panther DB | PTHR18860 PTHR18860:SF32 |
| NCBI CDD | KOG0841; Multifunctional chaperone (14-3-3 family) |
| KEGG Orthology | K06630; 14-3-3 protein epsilon |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G22300 : general regulatory factor 10 |
|---|---|
| RAP-DB (Rice) | LOC_Os11g39540.1 : 14-3-3 protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a029395 , Zm00025a044600 , Zm00025a057930 , Zm00025a055482 |
| Brachypodium | KQJ87861 , KQJ87860 , KQJ87863 , KQJ87862 , KQJ87865 , KQJ87864 |
| Barley | HORVU4Hr1G031620.8 , HORVU4Hr1G031620.9 , HORVU4Hr1G031620.6 , HORVU4Hr1G031620.2 , HORVU4Hr1G031620.3 , HORVU4Hr1G031620.1 , HORVU4Hr1G031620.14 , HORVU4Hr1G031620.10 , HORVU4Hr1G031620.11 , HORVU4Hr1G031620.12 , HORVU4Hr1G031620.13 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.005G183200 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 2 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 3 | Sobic.006G114700 | Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed | K00850: pfkA, 6-phosphofructokinase 1 |
| 4 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 5 | Sobic.001G200700 | expressed protein | - |
| 6 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 7 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 8 | Sobic.005G088700 | expressed protein | - |
| 9 | Sobic.001G323600 | transporter family protein, putative, expressed | - |
| 10 | Sobic.002G097000 | expressed protein | - |
| 11 | Sobic.001G373600 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 12 | Sobic.007G164500 | - | - |
| 13 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 14 | Sobic.001G466450 | - | - |
| 15 | Sobic.001G466450 | - | - |
| 16 | Sobic.001G466450 | - | - |
| 17 | Sobic.001G466450 | - | - |
| 18 | Sobic.001G466450 | - | - |
| 19 | Sobic.001G466450 | - | - |
| 20 | Sobic.001G466450 | - | - |
Gene co-expression network
Octagon: transcription factors
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