Gene annotation
| Transcriptome id | Sobic.001G200700.1 |
|---|---|
| Synonym | |
| Functional annotation | expressed protein |
| UniProt | A0A1B6QJX5 |
| Pfam | - |
| Panther DB | PTHR33836 PTHR33836:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G52300 : CAP160 protein |
|---|---|
| RAP-DB (Rice) | LOC_Os10g36180.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a006396 , Zm00025a017474 |
| Brachypodium | KQJ97368 |
| Barley | - |
| Wheat | TraesCS1D02G163800 , TraesCS6A02G418300 , TraesCS1D02G163800 , TraesCS6D02G403400 , TraesCS6D02G403400 , TraesCS6D02G403400 , TraesCS6D02G403400 , TraesCS1B02G204900 , TraesCS1B02G204900 , TraesCS1A02G175500 , TraesCSU02G072000 , TraesCSU02G072000 |
| Populus | - |
JBrowse
| Sobic.001G200700 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 2 | Sobic.003G194400 | HSF-type DNA-binding domain containing protein, expressed | K09419: heat shock transcription factor, other eukaryote |
| 3 | Sobic.003G292400 | NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed | K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) |
| 4 | Sobic.010G101300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed | K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit |
| 5 | Sobic.002G132500 | - | - |
| 6 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 7 | Sobic.006G104000 | ethylene-insensitive 3, putative, expressed | K14514: ethylene-insensitive protein 3 |
| 8 | Sobic.005G183200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@14-3-3 protein, putative, expressed | K06630: 14-3-3 protein epsilon |
| 9 | Sobic.009G116700 | "dehydrin SbDHN1, maps into mapped into a stay green mQTL (QSTG meta1.9)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@rab16/17 homolog(PubMedID : 15579713)@dehydrin, putative, expressed | - |
| 10 | Sobic.001G466450 | - | - |
| 11 | Sobic.001G466450 | - | - |
| 12 | Sobic.001G466450 | - | - |
| 13 | Sobic.001G466450 | - | - |
| 14 | Sobic.001G466450 | - | - |
| 15 | Sobic.001G466450 | - | - |
| 16 | Sobic.001G466450 | - | - |
| 17 | Sobic.007G164500 | - | - |
| 18 | Sobic.001G373600 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 19 | Sobic.004G243300 | expressed protein | - |
| 20 | Sobic.003G024600 | CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed | - |
Gene co-expression network
Octagon: transcription factors
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