Gene annotation
| Transcriptome id | Sobic.003G024600.1 |
|---|---|
| Synonym | SnRK3.9, ATWL4, Sb03g002360, WL4, CIPK12 |
| Functional annotation | CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| UniProt | C4P7T0 , C5XL57 |
| Pfam | PF14531 PF03822 |
| Panther DB | PTHR24347 PTHR24347:SF168 |
| NCBI CDD | KOG0583; Serine/threonine protein kinase |
| KEGG Orthology | - |
| Gene Ontology | GO:0007165; signal transduction |
Orthologs (automatic annotation)
| TAIR | AT4G18700 : CBL-interacting protein kinase 12 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g10870.1 : CAMK_KIN1/SNF1/Nim1_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed |
| MaizeGDB (Corn) | Zm00025a013904 , Zm00025a035876 , Zm00025a035877 , Zm00025a035878 , Zm00025a037946 |
| Brachypodium | KQK05416 , KQK03244 , KQK14650 |
| Barley | HORVU4Hr1G021090.1 , HORVU4Hr1G021090.2 , HORVU3Hr1G025810.1 , HORVU5Hr1G084670.1 , HORVU5Hr1G084670.2 , HORVU4Hr1G078890.1 , HORVU6Hr1G054210.1 , HORVU6Hr1G054210.2 , HORVU6Hr1G054210.3 , HORVU1Hr1G076910.4 , HORVU1Hr1G076910.5 , HORVU1Hr1G076910.6 , HORVU1Hr1G076910.1 , HORVU1Hr1G076910.2 , HORVU1Hr1G076910.3 , HORVU3Hr1G073100.4 , HORVU3Hr1G073100.2 , HORVU3Hr1G073100.3 , HORVU2Hr1G100890.1 , HORVU6Hr1G051980.2 , HORVU6Hr1G051980.1 , HORVU1Hr1G086300.2 , HORVU1Hr1G086300.3 , HORVU1Hr1G086300.1 , HORVU2Hr1G022990.1 , HORVU2Hr1G022980.1 |
| Wheat | TraesCS3B02G330600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G164500 | - | - |
| 2 | Sobic.001G373600 | Sugar transporter(PubMedID : 27330561)@Sugar transporter(PubMedID : 27330561)@nodulin MtN3 family protein, putative, expressed | K15382: SLC50A, solute carrier family 50 (sugar transporter) |
| 3 | Sobic.001G466450 | - | - |
| 4 | Sobic.001G466450 | - | - |
| 5 | Sobic.001G466450 | - | - |
| 6 | Sobic.001G466450 | - | - |
| 7 | Sobic.001G466450 | - | - |
| 8 | Sobic.001G466450 | - | - |
| 9 | Sobic.001G466450 | - | - |
| 10 | Sobic.001G323600 | transporter family protein, putative, expressed | - |
| 11 | Sobic.002G097000 | expressed protein | - |
| 12 | Sobic.005G088700 | expressed protein | - |
| 13 | Sobic.010G070750 | - | - |
| 14 | Sobic.009G046200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed | - |
| 15 | Sobic.004G308300 | xyloglucan fucosyltransferase, putative, expressed | K13681: xyloglucan fucosyltransferase |
| 16 | Sobic.006G142000 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 17 | Sobic.003G278200 | potassium channel AKT1, putative, expressed | - |
| 18 | Sobic.003G011400 | similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed | - |
| 19 | Sobic.009G158600 | - | - |
| 20 | Sobic.009G015500 | - | - |
Gene co-expression network
Octagon: transcription factors
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