Gene annotation
Transcriptome id Sobic.010G101300.2,Sobic.010G101300.1
Synonym IAR4, Sb10g008820
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
dehydrogenase E1 component domain containing protein, expressed
UniProt C5Z7K8
Pfam PF00676
Panther DB PTHR11516 PTHR11516:SF38
NCBI CDD -
KEGG Orthology K00161; PDHA, pyruvate dehydrogenase E1 component alpha subunit
Gene Ontology GO:0016624; oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT1G24180 : Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
RAP-DB (Rice) LOC_Os06g13720.1 : dehydrogenase E1 component domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049391 , Zm00025a021979 , Zm00025a033240
Brachypodium KQK18751
Barley HORVU6Hr1G076810.2 , HORVU6Hr1G076810.3 , HORVU6Hr1G076810.1 , HORVU7Hr1G040460.8 , HORVU7Hr1G040460.13 , HORVU7Hr1G040460.12 , HORVU7Hr1G040460.11 , HORVU7Hr1G040460.10 , HORVU7Hr1G040460.15 , HORVU7Hr1G040460.14 , HORVU7Hr1G040460.2 , HORVU7Hr1G040460.1 , HORVU7Hr1G040460.4
Wheat TraesCS7A02G238900 , TraesCS7A02G238900 , TraesCS7B02G103800 , TraesCS7B02G103800 , TraesCS7D02G199900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G292400 NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
2 Sobic.003G194400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
3 Sobic.006G114700 Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
4 Sobic.004G243300 expressed protein -
5 Sobic.009G171400 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.001G200700 expressed protein -
7 Sobic.005G183200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
8 Sobic.004G047900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@CBS domain containing membrane protein, putative, expressed -
9 Sobic.001G307000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G011400 similar to Os01g0225600 protein(PubMedID : 29862293)@late embryogenesis abundant protein, putative, expressed -
11 Sobic.005G138500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.003G011000 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@AAA-type ATPase family protein, putative, expressed -
13 Sobic.006G034300 Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
14 Sobic.002G132500 - -
15 Sobic.009G046200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@peripheral-type benzodiazepine receptor, putative, expressed -
16 Sobic.006G104000 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
17 Sobic.001G396900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
18 Sobic.001G466450 - -
19 Sobic.001G466450 - -
20 Sobic.001G466450 - -


Gene co-expression network
sample Sobic010G101300 Sobic010G101300 Sobic003G292400 Sobic003G292400 Sobic010G101300--Sobic003G292400 Sobic003G194400 Sobic003G194400 Sobic010G101300--Sobic003G194400 Sobic006G114700 Sobic006G114700 Sobic010G101300--Sobic006G114700 Sobic004G243300 Sobic004G243300 Sobic010G101300--Sobic004G243300 Sobic009G171400 Sobic009G171400 Sobic010G101300--Sobic009G171400 Sobic001G200700 Sobic001G200700 Sobic010G101300--Sobic001G200700 Sobic005G183200 Sobic005G183200 Sobic010G101300--Sobic005G183200 Sobic004G047900 Sobic004G047900 Sobic010G101300--Sobic004G047900 Sobic001G307000 Sobic001G307000 Sobic010G101300--Sobic001G307000 Sobic003G292400--Sobic010G101300 Sobic003G292400--Sobic003G194400 Sobic003G292400--Sobic001G200700 Sobic003G292400--Sobic006G114700 Sobic003G292400--Sobic004G243300 Sobic003G292400--Sobic004G047900 Sobic003G292400--Sobic005G183200 Sobic003G292400--Sobic009G171400 Sobic003G292400--Sobic001G307000 Sobic003G194400--Sobic010G101300 Sobic003G194400--Sobic003G292400 Sobic003G194400--Sobic001G200700 Sobic003G194400--Sobic004G243300 Sobic003G011400 Sobic003G011400 Sobic003G194400--Sobic003G011400 Sobic003G194400--Sobic005G183200 Sobic003G194400--Sobic006G114700 Sobic003G194400--Sobic001G307000 Sobic003G194400--Sobic004G047900 Sobic006G114700--Sobic010G101300 Sobic006G114700--Sobic003G292400 Sobic006G114700--Sobic003G194400 Sobic006G114700--Sobic005G183200 Sobic006G114700--Sobic009G171400 Sobic006G114700--Sobic004G243300 Sobic006G114700--Sobic001G200700 Sobic006G114700--Sobic001G307000 Sobic006G114700--Sobic004G047900 Sobic004G243300--Sobic003G194400 Sobic004G243300--Sobic010G101300 Sobic004G243300--Sobic003G292400 Sobic004G243300--Sobic001G200700 Sobic004G243300--Sobic009G171400 Sobic004G243300--Sobic006G114700 Sobic004G243300--Sobic004G047900 Sobic005G138500 Sobic005G138500 Sobic004G243300--Sobic005G138500 Sobic006G269501 Sobic006G269501 Sobic004G243300--Sobic006G269501 Sobic009G171400--Sobic010G101300 Sobic004G114600 Sobic004G114600 Sobic009G171400--Sobic004G114600 Sobic009G171400--Sobic005G138500 Sobic001G396900 Sobic001G396900 Sobic009G171400--Sobic001G396900 Sobic009G171400--Sobic003G292400 Sobic009G171400--Sobic004G243300 Sobic006G034300 Sobic006G034300 Sobic009G171400--Sobic006G034300 Sobic009G171400--Sobic006G114700 Sobic003G011000 Sobic003G011000 Sobic009G171400--Sobic003G011000 Sobic001G200700--Sobic003G011400 Sobic001G200700--Sobic003G194400 Sobic001G200700--Sobic003G292400 Sobic001G200700--Sobic010G101300 Sobic002G132500 Sobic002G132500 Sobic001G200700--Sobic002G132500 Sobic009G046200 Sobic009G046200 Sobic001G200700--Sobic009G046200 Sobic006G104000 Sobic006G104000 Sobic001G200700--Sobic006G104000 Sobic001G200700--Sobic005G183200 Sobic009G116700 Sobic009G116700 Sobic001G200700--Sobic009G116700 Sobic005G183200--Sobic003G194400 Sobic005G183200--Sobic003G011400 Sobic005G183200--Sobic006G114700 Sobic005G183200--Sobic010G101300 Sobic005G183200--Sobic001G200700 Sobic005G183200--Sobic003G292400 Sobic005G183200--Sobic009G116700 Sobic005G088700 Sobic005G088700 Sobic005G183200--Sobic005G088700 Sobic001G323600 Sobic001G323600 Sobic005G183200--Sobic001G323600 Sobic004G047900--Sobic001G307000 Sobic004G047900--Sobic003G292400 Sobic004G047900--Sobic001G200700 Sobic004G047900--Sobic010G101300 Sobic004G047900--Sobic003G194400 Sobic004G047900--Sobic004G243300 Sobic004G047900--Sobic006G114700 Sobic004G047900--Sobic003G011400 Sobic004G047900--Sobic009G171400 Sobic001G307000--Sobic004G047900 Sobic001G307000--Sobic003G292400 Sobic001G307000--Sobic003G194400 Sobic001G307000--Sobic010G101300 Sobic001G307000--Sobic001G200700 Sobic001G307000--Sobic004G243300 Sobic001G307000--Sobic006G114700 Sobic001G307000--Sobic006G104000 Sobic001G307000--Sobic003G011400
Octagon: transcription factors


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