Gene annotation
Transcriptome id Sobic.006G034300.2,Sobic.006G034300.1
Synonym Sb06g004280,
Functional annotation Transketolase (PubMedID : 26186930)
"Transketolase, putative (Os)" (PubMedID : 27208977)
Up-reguralion under drought (PubMedID : 24916767)
Up-reguralion under combine stress of drought and heat (PubMedID : 24916767)
transketolase, chloroplast precursor, putative, expressed
UniProt C5YDD1 , A0A1Z5RBW9
Pfam PF02779 PF00456 PF02780 PF02779 PF00456
Panther DB PTHR11624 PTHR11624:SF73
NCBI CDD -
KEGG Orthology K00615; E2.2.1.1, tktA, transketolase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT2G45290 : Transketolase
RAP-DB (Rice) LOC_Os04g19740.1 : transketolase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a012037
Brachypodium KQJ82181 , KQK19985
Barley HORVU6Hr1G003210.18 , HORVU6Hr1G003210.49 , HORVU6Hr1G003210.48 , HORVU6Hr1G003210.45 , HORVU6Hr1G003210.44 , HORVU6Hr1G003210.47 , HORVU6Hr1G003210.46 , HORVU6Hr1G003210.41 , HORVU6Hr1G003210.40 , HORVU6Hr1G003210.43 , HORVU6Hr1G003210.42 , HORVU6Hr1G003210.8 , HORVU6Hr1G003210.9 , HORVU6Hr1G003210.4 , HORVU6Hr1G003210.5 , HORVU6Hr1G003210.6 , HORVU6Hr1G003210.7 , HORVU6Hr1G003210.1 , HORVU6Hr1G003210.2 , HORVU6Hr1G003210.3 , HORVU6Hr1G003210.52 , HORVU6Hr1G003210.53 , HORVU6Hr1G003210.50 , HORVU6Hr1G003210.51 , HORVU6Hr1G003210.56 , HORVU6Hr1G003210.57 , HORVU6Hr1G003210.54 , HORVU6Hr1G003210.55 , HORVU6Hr1G003210.27 , HORVU6Hr1G003210.26 , HORVU6Hr1G003210.25 , HORVU6Hr1G003210.24 , HORVU6Hr1G003210.23 , HORVU6Hr1G003210.22 , HORVU6Hr1G003210.21 , HORVU6Hr1G003210.20 , HORVU6Hr1G003210.29 , HORVU6Hr1G003210.28 , HORVU5Hr1G007220.2 , HORVU5Hr1G007220.1 , HORVU6Hr1G003210.34 , HORVU6Hr1G003210.35 , HORVU6Hr1G003210.36 , HORVU6Hr1G003210.37 , HORVU6Hr1G003210.30 , HORVU6Hr1G003210.31 , HORVU6Hr1G003210.32 , HORVU6Hr1G003210.33 , HORVU6Hr1G003210.38 , HORVU6Hr1G003210.39 , HORVU2Hr1G012790.1 , HORVU6Hr1G003210.19 , HORVU6Hr1G003210.16 , HORVU6Hr1G003210.17 , HORVU6Hr1G003210.14 , HORVU6Hr1G003210.15 , HORVU6Hr1G003210.12 , HORVU6Hr1G003210.13 , HORVU6Hr1G003210.10 , HORVU6Hr1G003210.11 , HORVU2Hr1G012790.3 , HORVU2Hr1G012790.2 , HORVU2Hr1G012790.5 , HORVU2Hr1G012790.4
Wheat TraesCS2D02G073900 , TraesCS2B02G090100 , TraesCS2A02G075200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G011000 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@AAA-type ATPase family protein, putative, expressed -
2 Sobic.001G396900 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
3 Sobic.004G114600 expressed protein -
4 Sobic.005G165800 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SEY1, putative, expressed -
5 Sobic.009G171400 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.005G138500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G413200 glucosyltransferase, putative, expressed -
8 Sobic.006G050600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.006G208000 DNA repair ATPase-related, putative, expressed -
10 Sobic.010G101300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@dehydrogenase E1 component domain containing protein, expressed K00161: PDHA, pyruvate dehydrogenase E1 component alpha subunit
11 Sobic.001G044300 transcription factor, putative, expressed K09060: plant G-box-binding factor
12 Sobic.003G292400 NADP-dependent malic enzyme(PubMedID : 26186930)@NADP-malic enzyme(PubMedID : 26904072)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@C4 carbon fixation(PubMedID : 28620409)@NADP-dependent malic enzyme, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
13 Sobic.006G114700 Up-reguralion under drought(PubMedID : 24916767)@phosphofructokinase 2("PubMedID : 26759170,PubMedID : 24597475")@phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
14 Sobic.004G058600 aldehyde dehydrogenase, putative, expressed K17761: succinate-semialdehyde dehydrogenase, mitochondrial
15 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
16 Sobic.003G427300 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
17 Sobic.001G508200 multidrug resistance-associated protein, putative, expressed -
18 Sobic.002G143300 Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
19 Sobic.003G419500 xylanase inhibitor, putative, expressed -
20 Sobic.007G153600 similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6


Gene co-expression network
sample Sobic006G034300 Sobic006G034300 Sobic003G011000 Sobic003G011000 Sobic006G034300--Sobic003G011000 Sobic001G396900 Sobic001G396900 Sobic006G034300--Sobic001G396900 Sobic004G114600 Sobic004G114600 Sobic006G034300--Sobic004G114600 Sobic005G165800 Sobic005G165800 Sobic006G034300--Sobic005G165800 Sobic009G171400 Sobic009G171400 Sobic006G034300--Sobic009G171400 Sobic005G138500 Sobic005G138500 Sobic006G034300--Sobic005G138500 Sobic002G413200 Sobic002G413200 Sobic006G034300--Sobic002G413200 Sobic006G050600 Sobic006G050600 Sobic006G034300--Sobic006G050600 Sobic006G208000 Sobic006G208000 Sobic006G034300--Sobic006G208000 Sobic003G011000--Sobic006G034300 Sobic003G011000--Sobic009G171400 Sobic003G011000--Sobic004G114600 Sobic003G011000--Sobic005G138500 Sobic003G011000--Sobic001G396900 Sobic003G011000--Sobic005G165800 Sobic004G058600 Sobic004G058600 Sobic003G011000--Sobic004G058600 Sobic003G292400 Sobic003G292400 Sobic003G011000--Sobic003G292400 Sobic010G101300 Sobic010G101300 Sobic003G011000--Sobic010G101300 Sobic001G396900--Sobic005G138500 Sobic001G396900--Sobic004G114600 Sobic001G396900--Sobic006G034300 Sobic001G396900--Sobic005G165800 Sobic001G396900--Sobic009G171400 Sobic001G396900--Sobic002G413200 Sobic001G396900--Sobic003G011000 Sobic001G396900--Sobic006G050600 Sobic007G153600 Sobic007G153600 Sobic001G396900--Sobic007G153600 Sobic004G114600--Sobic002G413200 Sobic004G114600--Sobic001G396900 Sobic004G114600--Sobic006G208000 Sobic004G114600--Sobic009G171400 Sobic004G114600--Sobic006G034300 Sobic002G062100 Sobic002G062100 Sobic004G114600--Sobic002G062100 Sobic009G025500 Sobic009G025500 Sobic004G114600--Sobic009G025500 Sobic004G114600--Sobic006G050600 Sobic004G114600--Sobic005G165800 Sobic005G165800--Sobic001G396900 Sobic005G165800--Sobic004G114600 Sobic005G165800--Sobic006G208000 Sobic005G165800--Sobic006G034300 Sobic005G165800--Sobic002G413200 Sobic004G281700 Sobic004G281700 Sobic005G165800--Sobic004G281700 Sobic001G044300 Sobic001G044300 Sobic005G165800--Sobic001G044300 Sobic003G419500 Sobic003G419500 Sobic005G165800--Sobic003G419500 Sobic010G131500 Sobic010G131500 Sobic005G165800--Sobic010G131500 Sobic009G171400--Sobic010G101300 Sobic009G171400--Sobic004G114600 Sobic009G171400--Sobic005G138500 Sobic009G171400--Sobic001G396900 Sobic009G171400--Sobic003G292400 Sobic004G243300 Sobic004G243300 Sobic009G171400--Sobic004G243300 Sobic009G171400--Sobic006G034300 Sobic006G114700 Sobic006G114700 Sobic009G171400--Sobic006G114700 Sobic009G171400--Sobic003G011000 Sobic006G269501 Sobic006G269501 Sobic005G138500--Sobic006G269501 Sobic005G138500--Sobic001G396900 Sobic005G138500--Sobic009G171400 Sobic005G138500--Sobic002G413200 Sobic005G138500--Sobic004G114600 Sobic005G138500--Sobic006G050600 Sobic002G143300 Sobic002G143300 Sobic005G138500--Sobic002G143300 Sobic005G138500--Sobic006G034300 Sobic005G138500--Sobic004G243300 Sobic002G413200--Sobic007G153600 Sobic002G413200--Sobic004G114600 Sobic002G413200--Sobic002G143300 Sobic002G413200--Sobic002G062100 Sobic010G133000 Sobic010G133000 Sobic002G413200--Sobic010G133000 Sobic002G413200--Sobic006G208000 Sobic002G413200--Sobic009G025500 Sobic002G413200--Sobic001G044300 Sobic010G007800 Sobic010G007800 Sobic002G413200--Sobic010G007800 Sobic006G050600--Sobic004G114600 Sobic006G050600--Sobic005G138500 Sobic006G050600--Sobic009G171400 Sobic006G050600--Sobic002G413200 Sobic006G050600--Sobic001G396900 Sobic006G050600--Sobic006G034300 Sobic006G050600--Sobic002G143300 Sobic006G050600--Sobic003G011000 Sobic006G050600--Sobic006G269501 Sobic006G208000--Sobic009G025500 Sobic001G004600 Sobic001G004600 Sobic006G208000--Sobic001G004600 Sobic001G534200 Sobic001G534200 Sobic006G208000--Sobic001G534200 Sobic010G198900 Sobic010G198900 Sobic006G208000--Sobic010G198900 Sobic005G021000 Sobic005G021000 Sobic006G208000--Sobic005G021000 Sobic009G246250 Sobic009G246250 Sobic006G208000--Sobic009G246250 Sobic008G149300 Sobic008G149300 Sobic006G208000--Sobic008G149300 Sobic006G167700 Sobic006G167700 Sobic006G208000--Sobic006G167700 Sobic009G103800 Sobic009G103800 Sobic006G208000--Sobic009G103800
Octagon: transcription factors


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