Gene annotation
| Transcriptome id | Sobic.004G114600.1,Sobic.004G114600.2 |
|---|---|
| Synonym | Sb04g009370 |
| Functional annotation | expressed protein |
| UniProt | A0A1Z5RLV3 , C5XZG5 |
| Pfam | - |
| Panther DB | PTHR34967 PTHR34967:SF1 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G24130 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os02g15740.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a019930 |
| Brachypodium | KQJ94280 |
| Barley | HORVU3Hr1G026120.1 , HORVU3Hr1G058570.1 |
| Wheat | TraesCS3D02G138100 , TraesCS3B02G155100 , TraesCS3A02G137300 |
| Populus | - |
JBrowse
| Sobic.004G114600 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G413200 | glucosyltransferase, putative, expressed | - |
| 2 | Sobic.001G396900 | expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under drought(PubMedID : 24916767)@mitochondrial import inner membrane translocase subunit Tim17, putative, expressed | - |
| 3 | Sobic.006G208000 | DNA repair ATPase-related, putative, expressed | - |
| 4 | Sobic.009G171400 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 5 | Sobic.006G034300 | Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
| 6 | Sobic.002G062100 | exostosin family protein, putative, expressed | - |
| 7 | Sobic.009G025500 | OsRCI2-7 - Putative low temperature and salt responsive protein, expressed | - |
| 8 | Sobic.006G050600 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 9 | Sobic.005G165800 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@SEY1, putative, expressed | - |
| 10 | Sobic.005G138500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.007G153600 | similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed | K17279: receptor expression-enhancing protein 5/6 |
| 12 | Sobic.001G044300 | transcription factor, putative, expressed | K09060: plant G-box-binding factor |
| 13 | Sobic.003G011000 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@AAA-type ATPase family protein, putative, expressed | - |
| 14 | Sobic.001G004600 | expressed protein | - |
| 15 | Sobic.002G143300 | Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 16 | Sobic.003G419500 | xylanase inhibitor, putative, expressed | - |
| 17 | Sobic.010G024600 | aminomethyltransferase, putative, expressed | K06980: tRNA-modifying protein YgfZ |
| 18 | Sobic.001G508200 | multidrug resistance-associated protein, putative, expressed | - |
| 19 | Sobic.010G198900 | phytosulfokines 1 precursor, putative, expressed | - |
| 20 | Sobic.004G281700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@DUF1264 domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
