Gene annotation
Transcriptome id Sobic.010G024600.1
Synonym Sb10g002310
Functional annotation aminomethyltransferase, putative, expressed
UniProt C5Z3E0
Pfam PF08669
Panther DB PTHR22602 PTHR22602:SF0
NCBI CDD KOG2929; Transcription factor, component of CCR4 transcriptional complex
KEGG Orthology K06980; tRNA-modifying protein YgfZ
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G12130 : Glycine cleavage T-protein family
RAP-DB (Rice) LOC_Os06g04380.1 : aminomethyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a050120
Brachypodium KQK19976
Barley -
Wheat TraesCS4A02G371400 , TraesCS7D02G068700 , TraesCS7D02G068700
Populus -


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cDNA sequences
Sobic.010G024600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
2 Sobic.006G208000 DNA repair ATPase-related, putative, expressed -
3 Sobic.001G508200 multidrug resistance-associated protein, putative, expressed -
4 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
5 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
6 Sobic.001G004600 expressed protein -
7 Sobic.004G291200 - -
8 Sobic.009G025500 OsRCI2-7 - Putative low temperature and salt responsive protein, expressed -
9 Sobic.001G044300 transcription factor, putative, expressed K09060: plant G-box-binding factor
10 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.004G123200 MYB family transcription factor, putative, expressed -
12 Sobic.002G413200 glucosyltransferase, putative, expressed -
13 Sobic.007G168100 peptidyl-prolyl cis-trans isomerase, putative, expressed -
14 Sobic.003G098300 hydroxyproline-rich glycoprotein family protein, putative, expressed -
15 Sobic.002G062100 exostosin family protein, putative, expressed -
16 Sobic.007G153600 similar to Protein HVA22(PubMedID : 29862293)@HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
17 Sobic.001G393101 - -
18 Sobic.009G052600 universal stress protein domain containing protein, putative, expressed -
19 Sobic.004G033200 expressed protein -
20 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)


Gene co-expression network
sample Sobic010G024600 Sobic010G024600 Sobic002G266300 Sobic002G266300 Sobic010G024600--Sobic002G266300 Sobic006G208000 Sobic006G208000 Sobic010G024600--Sobic006G208000 Sobic001G508200 Sobic001G508200 Sobic010G024600--Sobic001G508200 Sobic005G021000 Sobic005G021000 Sobic010G024600--Sobic005G021000 Sobic004G347500 Sobic004G347500 Sobic010G024600--Sobic004G347500 Sobic001G004600 Sobic001G004600 Sobic010G024600--Sobic001G004600 Sobic004G291200 Sobic004G291200 Sobic010G024600--Sobic004G291200 Sobic009G025500 Sobic009G025500 Sobic010G024600--Sobic009G025500 Sobic001G044300 Sobic001G044300 Sobic010G024600--Sobic001G044300 Sobic006G217800 Sobic006G217800 Sobic002G266300--Sobic006G217800 Sobic002G266300--Sobic005G021000 Sobic001G534200 Sobic001G534200 Sobic002G266300--Sobic001G534200 Sobic001G254800 Sobic001G254800 Sobic002G266300--Sobic001G254800 Sobic001G125400 Sobic001G125400 Sobic002G266300--Sobic001G125400 Sobic002G266300--Sobic009G025500 Sobic007G053100 Sobic007G053100 Sobic002G266300--Sobic007G053100 Sobic003G398200 Sobic003G398200 Sobic002G266300--Sobic003G398200 Sobic002G266300--Sobic006G208000 Sobic006G208000--Sobic009G025500 Sobic006G208000--Sobic001G004600 Sobic006G208000--Sobic001G534200 Sobic010G198900 Sobic010G198900 Sobic006G208000--Sobic010G198900 Sobic006G208000--Sobic005G021000 Sobic009G246250 Sobic009G246250 Sobic006G208000--Sobic009G246250 Sobic008G149300 Sobic008G149300 Sobic006G208000--Sobic008G149300 Sobic006G167700 Sobic006G167700 Sobic006G208000--Sobic006G167700 Sobic009G103800 Sobic009G103800 Sobic006G208000--Sobic009G103800 Sobic006G013300 Sobic006G013300 Sobic001G508200--Sobic006G013300 Sobic001G508200--Sobic004G347500 Sobic009G208600 Sobic009G208600 Sobic001G508200--Sobic009G208600 Sobic001G508200--Sobic005G021000 Sobic001G508200--Sobic006G208000 Sobic001G508200--Sobic002G266300 Sobic001G508200--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic001G508200--Sobic003G098300 Sobic003G427300 Sobic003G427300 Sobic001G508200--Sobic003G427300 Sobic005G021000--Sobic001G254800 Sobic005G021000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic005G021000--Sobic003G443400 Sobic007G025600 Sobic007G025600 Sobic005G021000--Sobic007G025600 Sobic005G021000--Sobic008G149300 Sobic005G021000--Sobic001G534200 Sobic005G021000--Sobic009G103800 Sobic005G021000--Sobic006G167700 Sobic001G166900 Sobic001G166900 Sobic005G021000--Sobic001G166900 Sobic004G347500--Sobic005G021000 Sobic002G177600 Sobic002G177600 Sobic004G347500--Sobic002G177600 Sobic002G240000 Sobic002G240000 Sobic004G347500--Sobic002G240000 Sobic004G347500--Sobic001G004600 Sobic004G347500--Sobic001G534200 Sobic002G232900 Sobic002G232900 Sobic004G347500--Sobic002G232900 Sobic007G191500 Sobic007G191500 Sobic004G347500--Sobic007G191500 Sobic004G347500--Sobic006G217800 Sobic001G386600 Sobic001G386600 Sobic004G347500--Sobic001G386600 Sobic001G004600--Sobic009G025500 Sobic001G261420 Sobic001G261420 Sobic001G004600--Sobic001G261420 Sobic001G165600 Sobic001G165600 Sobic001G004600--Sobic001G165600 Sobic001G122600 Sobic001G122600 Sobic001G004600--Sobic001G122600 Sobic004G123200 Sobic004G123200 Sobic004G291200--Sobic004G123200 Sobic009G012500 Sobic009G012500 Sobic004G291200--Sobic009G012500 Sobic004G291200--Sobic010G024600 Sobic004G291200--Sobic002G266300 Sobic004G291200--Sobic006G217800 Sobic009G241900 Sobic009G241900 Sobic004G291200--Sobic009G241900 Sobic005G078132 Sobic005G078132 Sobic004G291200--Sobic005G078132 Sobic004G291200--Sobic005G021000 Sobic003G427200 Sobic003G427200 Sobic004G291200--Sobic003G427200 Sobic009G025500--Sobic010G198900 Sobic009G025500--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic009G025500--Sobic002G184700 Sobic002G211300 Sobic002G211300 Sobic009G025500--Sobic002G211300 Sobic010G125000 Sobic010G125000 Sobic009G025500--Sobic010G125000 Sobic001G344300 Sobic001G344300 Sobic009G025500--Sobic001G344300 Sobic009G025500--Sobic001G166900 Sobic003G372600 Sobic003G372600 Sobic009G025500--Sobic003G372600 Sobic009G025500--Sobic001G534200 Sobic009G037100 Sobic009G037100 Sobic001G044300--Sobic009G037100 Sobic001G044300--Sobic009G025500 Sobic005G165700 Sobic005G165700 Sobic001G044300--Sobic005G165700 Sobic004G164800 Sobic004G164800 Sobic001G044300--Sobic004G164800 Sobic001G044300--Sobic010G198900 Sobic001G044300--Sobic003G372600 Sobic003G144500 Sobic003G144500 Sobic001G044300--Sobic003G144500 Sobic001G498900 Sobic001G498900 Sobic001G044300--Sobic001G498900 Sobic001G044300--Sobic010G125000
Octagon: transcription factors


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