Gene annotation
Transcriptome id Sobic.004G033200.1
Synonym Sb04g002870
Functional annotation expressed protein
UniProt C5XTX7 , A0A097PNC3
Pfam -
Panther DB PTHR35506 PTHR35506:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11810 : -
RAP-DB (Rice) LOC_Os02g04260.1 : expressed protein
MaizeGDB (Corn) Zm00025a018905
Brachypodium PNT65822 , KQJ93196
Barley -
Wheat TraesCS6D02G090000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G033200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
2 Sobic.007G053100 amino acid permease family protein, putative, expressed -
3 Sobic.008G191850 - -
4 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
5 Sobic.004G066500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
6 Sobic.001G508200 multidrug resistance-associated protein, putative, expressed -
7 Sobic.009G052600 universal stress protein domain containing protein, putative, expressed -
8 Sobic.008G116600 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed -
9 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
10 Sobic.003G427200 uridine 5-monophosphate synthase, putative, expressed K13421: uridine monophosphate synthetase
K12486: stromal membrane-associated protein
11 Sobic.004G291200 - -
12 Sobic.003G098300 hydroxyproline-rich glycoprotein family protein, putative, expressed -
13 Sobic.002G010000 NLI interacting factor-like phosphatase, putative, expressed -
14 Sobic.010G211200 ZOS6-06 - C2H2 zinc finger protein, expressed -
15 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
16 Sobic.008G046000 expressed protein -
17 Sobic.004G058600 aldehyde dehydrogenase, putative, expressed K17761: succinate-semialdehyde dehydrogenase, mitochondrial
18 Sobic.004G123200 MYB family transcription factor, putative, expressed -
19 Sobic.003G001800 expressed protein -
20 Sobic.006G251500 inositol 1,3,4,5,6-pentakisphosphate 2-kinase, putative, expressed K10572: inositol-pentakisphosphate 2-kinase


Gene co-expression network
sample Sobic004G033200 Sobic004G033200 Sobic002G266300 Sobic002G266300 Sobic004G033200--Sobic002G266300 Sobic007G053100 Sobic007G053100 Sobic004G033200--Sobic007G053100 Sobic008G191850 Sobic008G191850 Sobic004G033200--Sobic008G191850 Sobic010G024600 Sobic010G024600 Sobic004G033200--Sobic010G024600 Sobic004G066500 Sobic004G066500 Sobic004G033200--Sobic004G066500 Sobic001G508200 Sobic001G508200 Sobic004G033200--Sobic001G508200 Sobic009G052600 Sobic009G052600 Sobic004G033200--Sobic009G052600 Sobic008G116600 Sobic008G116600 Sobic004G033200--Sobic008G116600 Sobic004G347500 Sobic004G347500 Sobic004G033200--Sobic004G347500 Sobic006G217800 Sobic006G217800 Sobic002G266300--Sobic006G217800 Sobic005G021000 Sobic005G021000 Sobic002G266300--Sobic005G021000 Sobic001G534200 Sobic001G534200 Sobic002G266300--Sobic001G534200 Sobic001G254800 Sobic001G254800 Sobic002G266300--Sobic001G254800 Sobic001G125400 Sobic001G125400 Sobic002G266300--Sobic001G125400 Sobic009G025500 Sobic009G025500 Sobic002G266300--Sobic009G025500 Sobic002G266300--Sobic007G053100 Sobic003G398200 Sobic003G398200 Sobic002G266300--Sobic003G398200 Sobic006G208000 Sobic006G208000 Sobic002G266300--Sobic006G208000 Sobic007G053100--Sobic002G266300 Sobic006G251500 Sobic006G251500 Sobic007G053100--Sobic006G251500 Sobic006G053200 Sobic006G053200 Sobic007G053100--Sobic006G053200 Sobic007G053100--Sobic001G125400 Sobic005G045700 Sobic005G045700 Sobic007G053100--Sobic005G045700 Sobic007G053100--Sobic004G033200 Sobic003G427300 Sobic003G427300 Sobic007G053100--Sobic003G427300 Sobic007G053100--Sobic004G066500 Sobic002G127900 Sobic002G127900 Sobic007G053100--Sobic002G127900 Sobic008G191850--Sobic002G266300 Sobic008G191850--Sobic004G066500 Sobic008G191850--Sobic005G021000 Sobic008G191850--Sobic001G534200 Sobic002G010000 Sobic002G010000 Sobic008G191850--Sobic002G010000 Sobic008G191850--Sobic006G217800 Sobic001G336200 Sobic001G336200 Sobic008G191850--Sobic001G336200 Sobic008G191850--Sobic004G347500 Sobic008G191850--Sobic007G053100 Sobic010G024600--Sobic002G266300 Sobic010G024600--Sobic006G208000 Sobic010G024600--Sobic001G508200 Sobic010G024600--Sobic005G021000 Sobic010G024600--Sobic004G347500 Sobic001G004600 Sobic001G004600 Sobic010G024600--Sobic001G004600 Sobic004G291200 Sobic004G291200 Sobic010G024600--Sobic004G291200 Sobic010G024600--Sobic009G025500 Sobic001G044300 Sobic001G044300 Sobic010G024600--Sobic001G044300 Sobic004G066500--Sobic008G191850 Sobic004G066500--Sobic007G053100 Sobic004G066500--Sobic004G033200 Sobic004G066500--Sobic003G427300 Sobic004G066500--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic004G066500--Sobic003G098300 Sobic004G066500--Sobic002G266300 Sobic004G066500--Sobic001G044300 Sobic004G066500--Sobic001G508200 Sobic006G013300 Sobic006G013300 Sobic001G508200--Sobic006G013300 Sobic001G508200--Sobic004G347500 Sobic009G208600 Sobic009G208600 Sobic001G508200--Sobic009G208600 Sobic001G508200--Sobic005G021000 Sobic001G508200--Sobic006G208000 Sobic001G508200--Sobic002G266300 Sobic001G508200--Sobic010G024600 Sobic001G508200--Sobic003G098300 Sobic001G508200--Sobic003G427300 Sobic009G052600--Sobic004G347500 Sobic009G052600--Sobic010G024600 Sobic009G052600--Sobic003G098300 Sobic001G386600 Sobic001G386600 Sobic009G052600--Sobic001G386600 Sobic009G052600--Sobic005G021000 Sobic009G052600--Sobic007G053100 Sobic001G261420 Sobic001G261420 Sobic009G052600--Sobic001G261420 Sobic002G177600 Sobic002G177600 Sobic009G052600--Sobic002G177600 Sobic003G011800 Sobic003G011800 Sobic009G052600--Sobic003G011800 Sobic008G116600--Sobic004G033200 Sobic006G212900 Sobic006G212900 Sobic008G116600--Sobic006G212900 Sobic002G332200 Sobic002G332200 Sobic008G116600--Sobic002G332200 Sobic002G385300 Sobic002G385300 Sobic008G116600--Sobic002G385300 Sobic009G195700 Sobic009G195700 Sobic008G116600--Sobic009G195700 Sobic004G058600 Sobic004G058600 Sobic008G116600--Sobic004G058600 Sobic008G116600--Sobic004G066500 Sobic003G126800 Sobic003G126800 Sobic008G116600--Sobic003G126800 Sobic003G200600 Sobic003G200600 Sobic008G116600--Sobic003G200600 Sobic004G347500--Sobic005G021000 Sobic004G347500--Sobic002G177600 Sobic002G240000 Sobic002G240000 Sobic004G347500--Sobic002G240000 Sobic004G347500--Sobic001G004600 Sobic004G347500--Sobic001G534200 Sobic002G232900 Sobic002G232900 Sobic004G347500--Sobic002G232900 Sobic007G191500 Sobic007G191500 Sobic004G347500--Sobic007G191500 Sobic004G347500--Sobic006G217800 Sobic004G347500--Sobic001G386600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.