Gene annotation
Transcriptome id Sobic.003G001800.2
Synonym
Functional annotation expressed protein
UniProt C5XJH8
Pfam PF07762
Panther DB PTHR33086 PTHR33086:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g13870.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS3D02G102400
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G014800 - -
2 Sobic.009G188600 lysM domain containing protein, putative, expressed -
3 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
4 Sobic.009G012500 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.004G123200 MYB family transcription factor, putative, expressed -
6 Sobic.001G136400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Desulfoglucosinolate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
7 Sobic.006G226000 expressed protein -
8 Sobic.010G037901 - -
9 Sobic.001G203350 - -
10 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
11 Sobic.010G053400 expressed protein -
12 Sobic.009G031800 - -
13 Sobic.002G240000 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
14 Sobic.006G083900 PHD-finger domain containing protein, expressed -
15 Sobic.006G208000 DNA repair ATPase-related, putative, expressed -
16 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
17 Sobic.005G196600 expressed protein -
18 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
19 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
20 Sobic.002G405700 expressed protein -


Gene co-expression network
sample Sobic003G001800 Sobic003G001800 Sobic009G014800 Sobic009G014800 Sobic003G001800--Sobic009G014800 Sobic009G188600 Sobic009G188600 Sobic003G001800--Sobic009G188600 Sobic002G055800 Sobic002G055800 Sobic003G001800--Sobic002G055800 Sobic009G012500 Sobic009G012500 Sobic003G001800--Sobic009G012500 Sobic004G123200 Sobic004G123200 Sobic003G001800--Sobic004G123200 Sobic001G136400 Sobic001G136400 Sobic003G001800--Sobic001G136400 Sobic006G226000 Sobic006G226000 Sobic003G001800--Sobic006G226000 Sobic010G037901 Sobic010G037901 Sobic003G001800--Sobic010G037901 Sobic001G203350 Sobic001G203350 Sobic003G001800--Sobic001G203350 Sobic009G014800--Sobic009G188600 Sobic009G014800--Sobic001G203350 Sobic010G053400 Sobic010G053400 Sobic009G014800--Sobic010G053400 Sobic009G014800--Sobic001G136400 Sobic006G083900 Sobic006G083900 Sobic009G014800--Sobic006G083900 Sobic009G014800--Sobic009G012500 Sobic006G234433 Sobic006G234433 Sobic009G014800--Sobic006G234433 Sobic008G149300 Sobic008G149300 Sobic009G014800--Sobic008G149300 Sobic002G197700 Sobic002G197700 Sobic009G014800--Sobic002G197700 Sobic009G188600--Sobic009G014800 Sobic009G188600--Sobic001G203350 Sobic009G188600--Sobic001G136400 Sobic009G188600--Sobic010G037901 Sobic009G188600--Sobic003G001800 Sobic009G188600--Sobic010G053400 Sobic003G086800 Sobic003G086800 Sobic009G188600--Sobic003G086800 Sobic009G188600--Sobic009G012500 Sobic009G188600--Sobic006G083900 Sobic002G055800--Sobic004G123200 Sobic002G055800--Sobic006G226000 Sobic002G055800--Sobic001G136400 Sobic001G366300 Sobic001G366300 Sobic002G055800--Sobic001G366300 Sobic002G055800--Sobic003G001800 Sobic002G055800--Sobic009G012500 Sobic002G055800--Sobic006G083900 Sobic002G240000 Sobic002G240000 Sobic002G055800--Sobic002G240000 Sobic004G142400 Sobic004G142400 Sobic002G055800--Sobic004G142400 Sobic006G217800 Sobic006G217800 Sobic009G012500--Sobic006G217800 Sobic009G012500--Sobic006G083900 Sobic007G008500 Sobic007G008500 Sobic009G012500--Sobic007G008500 Sobic001G393101 Sobic001G393101 Sobic009G012500--Sobic001G393101 Sobic009G012500--Sobic008G149300 Sobic001G166900 Sobic001G166900 Sobic009G012500--Sobic001G166900 Sobic003G443400 Sobic003G443400 Sobic009G012500--Sobic003G443400 Sobic001G534200 Sobic001G534200 Sobic009G012500--Sobic001G534200 Sobic007G025600 Sobic007G025600 Sobic009G012500--Sobic007G025600 Sobic004G123200--Sobic002G055800 Sobic004G123200--Sobic009G012500 Sobic004G222150 Sobic004G222150 Sobic004G123200--Sobic004G222150 Sobic004G123200--Sobic006G083900 Sobic004G123200--Sobic006G226000 Sobic002G256900 Sobic002G256900 Sobic004G123200--Sobic002G256900 Sobic004G123200--Sobic006G217800 Sobic002G266300 Sobic002G266300 Sobic004G123200--Sobic002G266300 Sobic004G123200--Sobic001G393101 Sobic001G136400--Sobic009G014800 Sobic001G136400--Sobic009G012500 Sobic001G136400--Sobic001G203350 Sobic001G136400--Sobic010G053400 Sobic001G136400--Sobic002G240000 Sobic001G136400--Sobic008G149300 Sobic009G246250 Sobic009G246250 Sobic001G136400--Sobic009G246250 Sobic001G136400--Sobic006G083900 Sobic001G136400--Sobic002G197700 Sobic009G031800 Sobic009G031800 Sobic006G226000--Sobic009G031800 Sobic007G160400 Sobic007G160400 Sobic006G226000--Sobic007G160400 Sobic006G226000--Sobic010G037901 Sobic006G226000--Sobic002G055800 Sobic006G226000--Sobic002G256900 Sobic006G226000--Sobic004G123200 Sobic006G226000--Sobic003G086800 Sobic006G226000--Sobic002G240000 Sobic006G226000--Sobic001G136400 Sobic005G196600 Sobic005G196600 Sobic010G037901--Sobic005G196600 Sobic010G037901--Sobic006G226000 Sobic010G037901--Sobic003G086800 Sobic010G037901--Sobic009G031800 Sobic010G037901--Sobic009G188600 Sobic005G153000 Sobic005G153000 Sobic010G037901--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic010G037901--Sobic006G135800 Sobic010G037901--Sobic007G160400 Sobic004G282601 Sobic004G282601 Sobic010G037901--Sobic004G282601 Sobic001G203350--Sobic010G053400 Sobic001G203350--Sobic009G014800 Sobic001G298032 Sobic001G298032 Sobic001G203350--Sobic001G298032 Sobic001G203350--Sobic006G083900 Sobic001G203350--Sobic006G234433 Sobic001G203350--Sobic008G149300 Sobic001G122600 Sobic001G122600 Sobic001G203350--Sobic001G122600
Octagon: transcription factors


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