Gene annotation
Transcriptome id Sobic.006G208000.5,Sobic.006G208000.2,Sobic.006G208000.7,Sobic.006G208000.1,Sobic.006G208000.4,Sobic.006G208000.8,Sobic.006G208000.6,Sobic.006G208000.3
Synonym Sb06g027890
Functional annotation DNA repair ATPase-related, putative, expressed
UniProt A0A1Z5RFB4 , A0A1Z5RET7 , A0A1Z5REW2 , A0A1B6PN32 , A0A1B6PN40 , A0A1Z5RFI6 , A0A1B6PMZ9 , A0A1B6PN37
Pfam -
Panther DB PTHR34360 PTHR34360:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24420 : myosin heavy chain-related,DNA repair ATPase-related
RAP-DB (Rice) LOC_Os04g51796.3 : DNA repair ATPase-related, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU2Hr1G100500.1 , HORVU2Hr1G100500.20
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G025500 OsRCI2-7 - Putative low temperature and salt responsive protein, expressed -
2 Sobic.001G004600 expressed protein -
3 Sobic.001G534200 - -
4 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
5 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
6 Sobic.009G246250 - -
7 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
8 Sobic.006G167700 oleosin, putative, expressed -
9 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
10 Sobic.002G062100 exostosin family protein, putative, expressed -
11 Sobic.007G025600 amino acid transporter, putative, expressed -
12 Sobic.002G184700 expressed protein -
13 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
14 Sobic.001G344300 - -
15 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
16 Sobic.001G254800 cytochrome P450, putative, expressed -
17 Sobic.010G125000 steroid nuclear receptor, ligand-binding, putative, expressed -
18 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
19 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
20 Sobic.001G165600 THION1 - Plant thionin family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic006G208000 Sobic006G208000 Sobic009G025500 Sobic009G025500 Sobic006G208000--Sobic009G025500 Sobic001G004600 Sobic001G004600 Sobic006G208000--Sobic001G004600 Sobic001G534200 Sobic001G534200 Sobic006G208000--Sobic001G534200 Sobic010G198900 Sobic010G198900 Sobic006G208000--Sobic010G198900 Sobic005G021000 Sobic005G021000 Sobic006G208000--Sobic005G021000 Sobic009G246250 Sobic009G246250 Sobic006G208000--Sobic009G246250 Sobic008G149300 Sobic008G149300 Sobic006G208000--Sobic008G149300 Sobic006G167700 Sobic006G167700 Sobic006G208000--Sobic006G167700 Sobic009G103800 Sobic009G103800 Sobic006G208000--Sobic009G103800 Sobic009G025500--Sobic010G198900 Sobic009G025500--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic009G025500--Sobic002G184700 Sobic002G211300 Sobic002G211300 Sobic009G025500--Sobic002G211300 Sobic010G125000 Sobic010G125000 Sobic009G025500--Sobic010G125000 Sobic001G344300 Sobic001G344300 Sobic009G025500--Sobic001G344300 Sobic001G166900 Sobic001G166900 Sobic009G025500--Sobic001G166900 Sobic003G372600 Sobic003G372600 Sobic009G025500--Sobic003G372600 Sobic009G025500--Sobic001G534200 Sobic001G004600--Sobic009G025500 Sobic001G261420 Sobic001G261420 Sobic001G004600--Sobic001G261420 Sobic001G165600 Sobic001G165600 Sobic001G004600--Sobic001G165600 Sobic001G122600 Sobic001G122600 Sobic001G004600--Sobic001G122600 Sobic001G534200--Sobic006G167700 Sobic001G534200--Sobic002G184700 Sobic001G534200--Sobic009G103800 Sobic001G534200--Sobic001G166900 Sobic001G534200--Sobic001G344300 Sobic001G534200--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G534200--Sobic001G208500 Sobic001G534200--Sobic002G211300 Sobic001G534200--Sobic010G198900 Sobic006G248000 Sobic006G248000 Sobic010G198900--Sobic006G248000 Sobic010G198900--Sobic003G372600 Sobic010G198900--Sobic006G167700 Sobic010G198900--Sobic001G166900 Sobic010G198900--Sobic002G211300 Sobic002G046000 Sobic002G046000 Sobic010G198900--Sobic002G046000 Sobic010G198900--Sobic002G184700 Sobic010G198900--Sobic010G125000 Sobic010G198900--Sobic009G103800 Sobic001G254800 Sobic001G254800 Sobic005G021000--Sobic001G254800 Sobic006G217800 Sobic006G217800 Sobic005G021000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic005G021000--Sobic003G443400 Sobic007G025600 Sobic007G025600 Sobic005G021000--Sobic007G025600 Sobic005G021000--Sobic008G149300 Sobic005G021000--Sobic001G534200 Sobic005G021000--Sobic009G103800 Sobic005G021000--Sobic006G167700 Sobic005G021000--Sobic001G166900 Sobic009G246250--Sobic008G149300 Sobic009G246250--Sobic001G122600 Sobic008G149300--Sobic001G122600 Sobic006G167700--Sobic002G184700 Sobic006G167700--Sobic009G103800 Sobic006G167700--Sobic001G344300 Sobic006G167700--Sobic001G166900 Sobic006G167700--Sobic001G165600 Sobic006G167700--Sobic002G046000 Sobic006G167700--Sobic002G211300 Sobic006G167700--Sobic003G372600 Sobic004G349550 Sobic004G349550 Sobic006G167700--Sobic004G349550 Sobic009G103800--Sobic002G184700 Sobic009G103800--Sobic001G344300 Sobic009G103800--Sobic006G167700 Sobic009G103800--Sobic002G046000 Sobic009G103800--Sobic004G349550 Sobic009G103800--Sobic001G166900 Sobic009G103800--Sobic007G025600 Sobic009G103800--Sobic003G372600 Sobic009G103800--Sobic001G534200
Octagon: transcription factors


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