Gene annotation
Transcriptome id Sobic.009G188600.1
Synonym
Functional annotation lysM domain containing protein, putative, expressed
UniProt A0A1B6P981
Pfam PF01476
Panther DB PTHR34997 PTHR34997:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g57390.1 : lysM domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G014800 - -
2 Sobic.001G203350 - -
3 Sobic.001G136400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Desulfoglucosinolate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
4 Sobic.010G037901 - -
5 Sobic.003G001800 expressed protein -
6 Sobic.010G053400 expressed protein -
7 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
8 Sobic.009G012500 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
9 Sobic.006G083900 PHD-finger domain containing protein, expressed -
10 Sobic.002G197700 -(PubMedID : 23108465)@ZOS4-05 - C2H2 zinc finger protein, expressed -
11 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
12 Sobic.006G226000 expressed protein -
13 Sobic.006G234433 - -
14 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
15 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -
16 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.001G122600 expressed protein -
18 Sobic.001G122600 expressed protein -
19 Sobic.001G122600 expressed protein -
20 Sobic.001G122600 expressed protein -


Gene co-expression network
sample Sobic009G188600 Sobic009G188600 Sobic009G014800 Sobic009G014800 Sobic009G188600--Sobic009G014800 Sobic001G203350 Sobic001G203350 Sobic009G188600--Sobic001G203350 Sobic001G136400 Sobic001G136400 Sobic009G188600--Sobic001G136400 Sobic010G037901 Sobic010G037901 Sobic009G188600--Sobic010G037901 Sobic003G001800 Sobic003G001800 Sobic009G188600--Sobic003G001800 Sobic010G053400 Sobic010G053400 Sobic009G188600--Sobic010G053400 Sobic003G086800 Sobic003G086800 Sobic009G188600--Sobic003G086800 Sobic009G012500 Sobic009G012500 Sobic009G188600--Sobic009G012500 Sobic006G083900 Sobic006G083900 Sobic009G188600--Sobic006G083900 Sobic009G014800--Sobic009G188600 Sobic009G014800--Sobic001G203350 Sobic009G014800--Sobic010G053400 Sobic009G014800--Sobic001G136400 Sobic009G014800--Sobic006G083900 Sobic009G014800--Sobic009G012500 Sobic006G234433 Sobic006G234433 Sobic009G014800--Sobic006G234433 Sobic008G149300 Sobic008G149300 Sobic009G014800--Sobic008G149300 Sobic002G197700 Sobic002G197700 Sobic009G014800--Sobic002G197700 Sobic001G203350--Sobic010G053400 Sobic001G203350--Sobic009G014800 Sobic001G298032 Sobic001G298032 Sobic001G203350--Sobic001G298032 Sobic001G203350--Sobic006G083900 Sobic001G203350--Sobic006G234433 Sobic001G203350--Sobic008G149300 Sobic001G122600 Sobic001G122600 Sobic001G203350--Sobic001G122600 Sobic001G136400--Sobic009G014800 Sobic001G136400--Sobic009G012500 Sobic001G136400--Sobic001G203350 Sobic001G136400--Sobic010G053400 Sobic002G240000 Sobic002G240000 Sobic001G136400--Sobic002G240000 Sobic001G136400--Sobic008G149300 Sobic009G246250 Sobic009G246250 Sobic001G136400--Sobic009G246250 Sobic001G136400--Sobic006G083900 Sobic001G136400--Sobic002G197700 Sobic005G196600 Sobic005G196600 Sobic010G037901--Sobic005G196600 Sobic006G226000 Sobic006G226000 Sobic010G037901--Sobic006G226000 Sobic010G037901--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic010G037901--Sobic009G031800 Sobic010G037901--Sobic009G188600 Sobic005G153000 Sobic005G153000 Sobic010G037901--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic010G037901--Sobic006G135800 Sobic007G160400 Sobic007G160400 Sobic010G037901--Sobic007G160400 Sobic004G282601 Sobic004G282601 Sobic010G037901--Sobic004G282601 Sobic003G001800--Sobic009G014800 Sobic003G001800--Sobic009G188600 Sobic002G055800 Sobic002G055800 Sobic003G001800--Sobic002G055800 Sobic003G001800--Sobic009G012500 Sobic004G123200 Sobic004G123200 Sobic003G001800--Sobic004G123200 Sobic003G001800--Sobic001G136400 Sobic003G001800--Sobic006G226000 Sobic003G001800--Sobic010G037901 Sobic003G001800--Sobic001G203350 Sobic010G053400--Sobic001G122600 Sobic003G086800--Sobic010G037901 Sobic003G086800--Sobic007G160400 Sobic003G086800--Sobic006G226000 Sobic002G256900 Sobic002G256900 Sobic003G086800--Sobic002G256900 Sobic004G142400 Sobic004G142400 Sobic003G086800--Sobic004G142400 Sobic003G086800--Sobic009G014800 Sobic003G086800--Sobic004G123200 Sobic003G086800--Sobic006G083900 Sobic003G086800--Sobic001G203350 Sobic006G217800 Sobic006G217800 Sobic009G012500--Sobic006G217800 Sobic009G012500--Sobic006G083900 Sobic007G008500 Sobic007G008500 Sobic009G012500--Sobic007G008500 Sobic001G393101 Sobic001G393101 Sobic009G012500--Sobic001G393101 Sobic009G012500--Sobic008G149300 Sobic001G166900 Sobic001G166900 Sobic009G012500--Sobic001G166900 Sobic003G443400 Sobic003G443400 Sobic009G012500--Sobic003G443400 Sobic001G534200 Sobic001G534200 Sobic009G012500--Sobic001G534200 Sobic007G025600 Sobic007G025600 Sobic009G012500--Sobic007G025600 Sobic006G083900--Sobic006G234433 Sobic006G083900--Sobic008G149300 Sobic004G349550 Sobic004G349550 Sobic006G083900--Sobic004G349550 Sobic006G083900--Sobic010G053400 Sobic006G083900--Sobic001G122600
Octagon: transcription factors


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