Gene annotation
Transcriptome id Sobic.009G012500.1
Synonym RPA70A, RPA1A, ATRPA70A, ATRPA1A
Functional annotation RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
UniProt B3VTD1
Pfam PF00098 PF01336 PF16900 PF04057 PF08646
Panther DB PTHR23273 PTHR23273:SF12
NCBI CDD -
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding GO:0006260DNA replication GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G45400 : Replication factor-A protein 1-related
RAP-DB (Rice) LOC_Os05g02040.1 : RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
MaizeGDB (Corn) Zm00025a040948
Brachypodium -
Barley HORVU1Hr1G004910.4 , HORVU1Hr1G004910.1 , HORVU1Hr1G004910.3 , HORVU1Hr1G004910.2 , HORVU1Hr1G018380.5 , HORVU1Hr1G018380.4 , HORVU1Hr1G018380.1 , HORVU1Hr1G018380.3 , HORVU1Hr1G018380.2
Wheat TraesCS1D02G086400 , TraesCS1A02G085000 , TraesCS1B02G102200 , TraesCS1B02G102200
Populus -


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cDNA sequences
Sobic.009G012500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.006G083900 PHD-finger domain containing protein, expressed -
3 Sobic.007G008500 basic helix-loop-helix family protein, putative, expressed -
4 Sobic.001G393101 - -
5 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
6 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
7 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
8 Sobic.001G534200 - -
9 Sobic.007G025600 amino acid transporter, putative, expressed -
10 Sobic.010G053400 expressed protein -
11 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
12 Sobic.006G234433 - -
13 Sobic.006G167700 oleosin, putative, expressed -
14 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
15 Sobic.006G248000 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
16 Sobic.002G184700 expressed protein -
17 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
18 Sobic.001G254800 cytochrome P450, putative, expressed -
19 Sobic.001G344300 - -
20 Sobic.005G184800 - -


Gene co-expression network
sample Sobic009G012500 Sobic009G012500 Sobic006G217800 Sobic006G217800 Sobic009G012500--Sobic006G217800 Sobic006G083900 Sobic006G083900 Sobic009G012500--Sobic006G083900 Sobic007G008500 Sobic007G008500 Sobic009G012500--Sobic007G008500 Sobic001G393101 Sobic001G393101 Sobic009G012500--Sobic001G393101 Sobic008G149300 Sobic008G149300 Sobic009G012500--Sobic008G149300 Sobic001G166900 Sobic001G166900 Sobic009G012500--Sobic001G166900 Sobic003G443400 Sobic003G443400 Sobic009G012500--Sobic003G443400 Sobic001G534200 Sobic001G534200 Sobic009G012500--Sobic001G534200 Sobic007G025600 Sobic007G025600 Sobic009G012500--Sobic007G025600 Sobic006G217800--Sobic003G443400 Sobic006G217800--Sobic001G393101 Sobic006G217800--Sobic001G166900 Sobic006G167700 Sobic006G167700 Sobic006G217800--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic006G217800--Sobic002G184700 Sobic009G103800 Sobic009G103800 Sobic006G217800--Sobic009G103800 Sobic006G217800--Sobic008G149300 Sobic001G344300 Sobic001G344300 Sobic006G217800--Sobic001G344300 Sobic001G165600 Sobic001G165600 Sobic006G217800--Sobic001G165600 Sobic006G234433 Sobic006G234433 Sobic006G083900--Sobic006G234433 Sobic006G083900--Sobic008G149300 Sobic004G349550 Sobic004G349550 Sobic006G083900--Sobic004G349550 Sobic010G053400 Sobic010G053400 Sobic006G083900--Sobic010G053400 Sobic001G122600 Sobic001G122600 Sobic006G083900--Sobic001G122600 Sobic007G008500--Sobic001G166900 Sobic006G248000 Sobic006G248000 Sobic007G008500--Sobic006G248000 Sobic007G008500--Sobic004G349550 Sobic002G046000 Sobic002G046000 Sobic007G008500--Sobic002G046000 Sobic010G198900 Sobic010G198900 Sobic007G008500--Sobic010G198900 Sobic007G008500--Sobic006G167700 Sobic007G008500--Sobic009G103800 Sobic007G008500--Sobic002G184700 Sobic007G008500--Sobic007G025600 Sobic001G393101--Sobic003G443400 Sobic001G393101--Sobic006G217800 Sobic005G184800 Sobic005G184800 Sobic001G393101--Sobic005G184800 Sobic001G393101--Sobic008G149300 Sobic001G393101--Sobic001G122600 Sobic008G149300--Sobic001G122600 Sobic001G166900--Sobic006G167700 Sobic001G166900--Sobic002G184700 Sobic001G166900--Sobic006G248000 Sobic001G166900--Sobic002G046000 Sobic001G166900--Sobic009G103800 Sobic001G166900--Sobic001G344300 Sobic003G372600 Sobic003G372600 Sobic001G166900--Sobic003G372600 Sobic002G211300 Sobic002G211300 Sobic001G166900--Sobic002G211300 Sobic001G166900--Sobic010G198900 Sobic003G443400--Sobic006G217800 Sobic003G443400--Sobic001G393101 Sobic003G443400--Sobic004G349550 Sobic003G443400--Sobic008G149300 Sobic003G443400--Sobic009G103800 Sobic003G443400--Sobic006G167700 Sobic003G443400--Sobic001G166900 Sobic003G443400--Sobic001G344300 Sobic005G184700 Sobic005G184700 Sobic003G443400--Sobic005G184700 Sobic001G534200--Sobic006G167700 Sobic001G534200--Sobic002G184700 Sobic001G534200--Sobic009G103800 Sobic001G534200--Sobic001G166900 Sobic001G534200--Sobic001G344300 Sobic001G534200--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G534200--Sobic001G208500 Sobic001G534200--Sobic002G211300 Sobic001G534200--Sobic010G198900 Sobic001G254800 Sobic001G254800 Sobic007G025600--Sobic001G254800 Sobic007G025600--Sobic009G103800 Sobic007G025600--Sobic006G167700 Sobic007G025600--Sobic004G349550 Sobic007G025600--Sobic001G344300 Sobic007G025600--Sobic008G149300 Sobic007G025600--Sobic002G184700 Sobic007G025600--Sobic001G166900 Sobic007G025600--Sobic001G534200
Octagon: transcription factors


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