Gene annotation
Transcriptome id Sobic.006G217800.1
Synonym Sb06g028750, PIL5, PIF1
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5YG39
Pfam PF00010
Panther DB PTHR12565 PTHR12565:SF145
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09530 : phytochrome interacting factor 3
RAP-DB (Rice) LOC_Os04g52770.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a057044 , Zm00025a009752
Brachypodium KQJ84635
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
2 Sobic.001G393101 - -
3 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
4 Sobic.006G167700 oleosin, putative, expressed -
5 Sobic.002G184700 expressed protein -
6 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
8 Sobic.001G344300 - -
9 Sobic.001G165600 THION1 - Plant thionin family protein precursor, putative, expressed -
10 Sobic.001G534200 - -
11 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
12 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.010G125000 steroid nuclear receptor, ligand-binding, putative, expressed -
14 Sobic.006G248000 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
15 Sobic.002G211300 aminotransferase, classes I and II, domain containing protein, expressed K00814: GPT, alanine transaminase
16 Sobic.007G025600 amino acid transporter, putative, expressed -
17 Sobic.001G254800 cytochrome P450, putative, expressed -
18 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
19 Sobic.006G083900 PHD-finger domain containing protein, expressed -
20 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -


Gene co-expression network
sample Sobic006G217800 Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic006G217800--Sobic003G443400 Sobic001G393101 Sobic001G393101 Sobic006G217800--Sobic001G393101 Sobic001G166900 Sobic001G166900 Sobic006G217800--Sobic001G166900 Sobic006G167700 Sobic006G167700 Sobic006G217800--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic006G217800--Sobic002G184700 Sobic009G103800 Sobic009G103800 Sobic006G217800--Sobic009G103800 Sobic008G149300 Sobic008G149300 Sobic006G217800--Sobic008G149300 Sobic001G344300 Sobic001G344300 Sobic006G217800--Sobic001G344300 Sobic001G165600 Sobic001G165600 Sobic006G217800--Sobic001G165600 Sobic003G443400--Sobic006G217800 Sobic003G443400--Sobic001G393101 Sobic004G349550 Sobic004G349550 Sobic003G443400--Sobic004G349550 Sobic003G443400--Sobic008G149300 Sobic003G443400--Sobic009G103800 Sobic003G443400--Sobic006G167700 Sobic003G443400--Sobic001G166900 Sobic003G443400--Sobic001G344300 Sobic005G184700 Sobic005G184700 Sobic003G443400--Sobic005G184700 Sobic001G393101--Sobic003G443400 Sobic001G393101--Sobic006G217800 Sobic005G184800 Sobic005G184800 Sobic001G393101--Sobic005G184800 Sobic001G393101--Sobic008G149300 Sobic001G122600 Sobic001G122600 Sobic001G393101--Sobic001G122600 Sobic001G166900--Sobic006G167700 Sobic001G166900--Sobic002G184700 Sobic006G248000 Sobic006G248000 Sobic001G166900--Sobic006G248000 Sobic002G046000 Sobic002G046000 Sobic001G166900--Sobic002G046000 Sobic001G166900--Sobic009G103800 Sobic001G166900--Sobic001G344300 Sobic003G372600 Sobic003G372600 Sobic001G166900--Sobic003G372600 Sobic002G211300 Sobic002G211300 Sobic001G166900--Sobic002G211300 Sobic010G198900 Sobic010G198900 Sobic001G166900--Sobic010G198900 Sobic006G167700--Sobic002G184700 Sobic006G167700--Sobic009G103800 Sobic006G167700--Sobic001G344300 Sobic006G167700--Sobic001G166900 Sobic006G167700--Sobic001G165600 Sobic006G167700--Sobic002G046000 Sobic006G167700--Sobic002G211300 Sobic006G167700--Sobic003G372600 Sobic006G167700--Sobic004G349550 Sobic002G184700--Sobic009G103800 Sobic002G184700--Sobic006G167700 Sobic002G184700--Sobic001G344300 Sobic002G184700--Sobic002G046000 Sobic002G184700--Sobic003G372600 Sobic002G184700--Sobic001G166900 Sobic002G184700--Sobic002G211300 Sobic001G208500 Sobic001G208500 Sobic002G184700--Sobic001G208500 Sobic002G184700--Sobic004G349550 Sobic009G103800--Sobic002G184700 Sobic009G103800--Sobic001G344300 Sobic009G103800--Sobic006G167700 Sobic009G103800--Sobic002G046000 Sobic009G103800--Sobic004G349550 Sobic009G103800--Sobic001G166900 Sobic007G025600 Sobic007G025600 Sobic009G103800--Sobic007G025600 Sobic009G103800--Sobic003G372600 Sobic001G534200 Sobic001G534200 Sobic009G103800--Sobic001G534200 Sobic008G149300--Sobic001G122600 Sobic001G344300--Sobic009G103800 Sobic001G344300--Sobic002G184700 Sobic001G344300--Sobic006G167700 Sobic001G344300--Sobic004G349550 Sobic001G344300--Sobic002G046000 Sobic001G344300--Sobic001G165600 Sobic001G344300--Sobic001G166900 Sobic001G344300--Sobic003G372600 Sobic001G344300--Sobic002G211300 Sobic010G125000 Sobic010G125000 Sobic001G165600--Sobic010G125000 Sobic001G165600--Sobic006G167700 Sobic001G165600--Sobic001G122600
Octagon: transcription factors


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