Gene annotation
Transcriptome id Sobic.002G240000.2
Synonym Sb02g027750
Functional annotation expressed protein
UniProt C5X3Q3
Pfam PF10354
Panther DB PTHR11538 PTHR11538:SF43
NCBI CDD -
KEGG Orthology K19307; 25S rRNA (uracil2634-N3)-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55790 : Domain of unknown function (DUF2431)
RAP-DB (Rice) LOC_Os09g30210.1 : expressed protein
MaizeGDB (Corn) Zm00025a047388
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
2 Sobic.001G254800 cytochrome P450, putative, expressed -
3 Sobic.001G534200 - -
4 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
5 Sobic.009G246250 - -
6 Sobic.006G083900 PHD-finger domain containing protein, expressed -
7 Sobic.010G053400 expressed protein -
8 Sobic.007G025600 amino acid transporter, putative, expressed -
9 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.006G234433 - -
11 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
12 Sobic.006G167700 oleosin, putative, expressed -
13 Sobic.005G126701 - -
14 Sobic.001G298032 - -
15 Sobic.001G344300 - -
16 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
17 Sobic.002G184700 expressed protein -
18 Sobic.001G122600 expressed protein -
19 Sobic.001G122600 expressed protein -
20 Sobic.001G122600 expressed protein -


Gene co-expression network
sample Sobic002G240000 Sobic002G240000 Sobic005G021000 Sobic005G021000 Sobic002G240000--Sobic005G021000 Sobic001G254800 Sobic001G254800 Sobic002G240000--Sobic001G254800 Sobic001G534200 Sobic001G534200 Sobic002G240000--Sobic001G534200 Sobic008G149300 Sobic008G149300 Sobic002G240000--Sobic008G149300 Sobic009G246250 Sobic009G246250 Sobic002G240000--Sobic009G246250 Sobic006G083900 Sobic006G083900 Sobic002G240000--Sobic006G083900 Sobic010G053400 Sobic010G053400 Sobic002G240000--Sobic010G053400 Sobic007G025600 Sobic007G025600 Sobic002G240000--Sobic007G025600 Sobic004G349550 Sobic004G349550 Sobic002G240000--Sobic004G349550 Sobic005G021000--Sobic001G254800 Sobic006G217800 Sobic006G217800 Sobic005G021000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic005G021000--Sobic003G443400 Sobic005G021000--Sobic007G025600 Sobic005G021000--Sobic008G149300 Sobic005G021000--Sobic001G534200 Sobic009G103800 Sobic009G103800 Sobic005G021000--Sobic009G103800 Sobic006G167700 Sobic006G167700 Sobic005G021000--Sobic006G167700 Sobic001G166900 Sobic001G166900 Sobic005G021000--Sobic001G166900 Sobic001G254800--Sobic007G025600 Sobic001G254800--Sobic009G103800 Sobic001G254800--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic001G254800--Sobic002G184700 Sobic001G344300 Sobic001G344300 Sobic001G254800--Sobic001G344300 Sobic001G254800--Sobic004G349550 Sobic001G254800--Sobic001G534200 Sobic010G198900 Sobic010G198900 Sobic001G254800--Sobic010G198900 Sobic001G254800--Sobic001G166900 Sobic001G534200--Sobic006G167700 Sobic001G534200--Sobic002G184700 Sobic001G534200--Sobic009G103800 Sobic001G534200--Sobic001G166900 Sobic001G534200--Sobic001G344300 Sobic003G372600 Sobic003G372600 Sobic001G534200--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G534200--Sobic001G208500 Sobic002G211300 Sobic002G211300 Sobic001G534200--Sobic002G211300 Sobic001G534200--Sobic010G198900 Sobic001G122600 Sobic001G122600 Sobic008G149300--Sobic001G122600 Sobic009G246250--Sobic008G149300 Sobic009G246250--Sobic001G122600 Sobic006G234433 Sobic006G234433 Sobic006G083900--Sobic006G234433 Sobic006G083900--Sobic008G149300 Sobic006G083900--Sobic004G349550 Sobic006G083900--Sobic010G053400 Sobic006G083900--Sobic001G122600 Sobic010G053400--Sobic001G122600 Sobic007G025600--Sobic001G254800 Sobic007G025600--Sobic009G103800 Sobic007G025600--Sobic006G167700 Sobic007G025600--Sobic004G349550 Sobic007G025600--Sobic001G344300 Sobic007G025600--Sobic008G149300 Sobic007G025600--Sobic002G184700 Sobic007G025600--Sobic001G166900 Sobic007G025600--Sobic001G534200 Sobic004G349550--Sobic001G344300 Sobic004G349550--Sobic008G149300 Sobic004G349550--Sobic009G103800 Sobic004G349550--Sobic006G167700 Sobic005G184700 Sobic005G184700 Sobic004G349550--Sobic005G184700 Sobic005G184800 Sobic005G184800 Sobic004G349550--Sobic005G184800 Sobic001G165600 Sobic001G165600 Sobic004G349550--Sobic001G165600 Sobic004G349550--Sobic002G184700 Sobic004G349550--Sobic001G122600
Octagon: transcription factors


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