Gene annotation
Transcriptome id Sobic.009G031800.1
Synonym
Functional annotation -
UniProt A0A1B6P683
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium PNT72029
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G226000 expressed protein -
2 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -
3 Sobic.010G037901 - -
4 Sobic.009G012500 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.005G126701 - -
6 Sobic.001G254700 TPD1, putative, expressed -
7 Sobic.006G083900 PHD-finger domain containing protein, expressed -
8 Sobic.007G025600 amino acid transporter, putative, expressed -
9 Sobic.001G534200 - -
10 Sobic.001G136400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Desulfoglucosinolate sulfotransferase (At)(PubMedID : 27208977)@sulfotransferase domain containing protein, expressed -
11 Sobic.002G240000 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
12 Sobic.001G254800 cytochrome P450, putative, expressed -
13 Sobic.003G100000 Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed K05350: beta-glucosidase
14 Sobic.007G008500 basic helix-loop-helix family protein, putative, expressed -
15 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
16 Sobic.004G123200 MYB family transcription factor, putative, expressed -
17 Sobic.010G110100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"A transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659933)@transcription factor, putative, expressed K14431: transcription factor TGA
18 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
19 Sobic.008G018100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
20 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -


Gene co-expression network
sample Sobic009G031800 Sobic009G031800 Sobic006G226000 Sobic006G226000 Sobic009G031800--Sobic006G226000 Sobic007G160400 Sobic007G160400 Sobic009G031800--Sobic007G160400 Sobic010G037901 Sobic010G037901 Sobic009G031800--Sobic010G037901 Sobic009G012500 Sobic009G012500 Sobic009G031800--Sobic009G012500 Sobic005G126701 Sobic005G126701 Sobic009G031800--Sobic005G126701 Sobic001G254700 Sobic001G254700 Sobic009G031800--Sobic001G254700 Sobic006G083900 Sobic006G083900 Sobic009G031800--Sobic006G083900 Sobic007G025600 Sobic007G025600 Sobic009G031800--Sobic007G025600 Sobic001G534200 Sobic001G534200 Sobic009G031800--Sobic001G534200 Sobic006G226000--Sobic009G031800 Sobic006G226000--Sobic007G160400 Sobic006G226000--Sobic010G037901 Sobic002G055800 Sobic002G055800 Sobic006G226000--Sobic002G055800 Sobic002G256900 Sobic002G256900 Sobic006G226000--Sobic002G256900 Sobic004G123200 Sobic004G123200 Sobic006G226000--Sobic004G123200 Sobic003G086800 Sobic003G086800 Sobic006G226000--Sobic003G086800 Sobic002G240000 Sobic002G240000 Sobic006G226000--Sobic002G240000 Sobic001G136400 Sobic001G136400 Sobic006G226000--Sobic001G136400 Sobic004G142400 Sobic004G142400 Sobic007G160400--Sobic004G142400 Sobic007G160400--Sobic006G226000 Sobic007G160400--Sobic005G126701 Sobic007G160400--Sobic006G083900 Sobic007G008500 Sobic007G008500 Sobic007G160400--Sobic007G008500 Sobic007G160400--Sobic003G086800 Sobic007G160400--Sobic009G012500 Sobic007G160400--Sobic009G031800 Sobic010G110100 Sobic010G110100 Sobic007G160400--Sobic010G110100 Sobic005G196600 Sobic005G196600 Sobic010G037901--Sobic005G196600 Sobic010G037901--Sobic006G226000 Sobic010G037901--Sobic003G086800 Sobic010G037901--Sobic009G031800 Sobic009G188600 Sobic009G188600 Sobic010G037901--Sobic009G188600 Sobic005G153000 Sobic005G153000 Sobic010G037901--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic010G037901--Sobic006G135800 Sobic010G037901--Sobic007G160400 Sobic004G282601 Sobic004G282601 Sobic010G037901--Sobic004G282601 Sobic006G217800 Sobic006G217800 Sobic009G012500--Sobic006G217800 Sobic009G012500--Sobic006G083900 Sobic009G012500--Sobic007G008500 Sobic001G393101 Sobic001G393101 Sobic009G012500--Sobic001G393101 Sobic008G149300 Sobic008G149300 Sobic009G012500--Sobic008G149300 Sobic001G166900 Sobic001G166900 Sobic009G012500--Sobic001G166900 Sobic003G443400 Sobic003G443400 Sobic009G012500--Sobic003G443400 Sobic009G012500--Sobic001G534200 Sobic009G012500--Sobic007G025600 Sobic001G254800 Sobic001G254800 Sobic005G126701--Sobic001G254800 Sobic005G126701--Sobic006G083900 Sobic005G126701--Sobic007G025600 Sobic005G126701--Sobic001G534200 Sobic006G234433 Sobic006G234433 Sobic005G126701--Sobic006G234433 Sobic009G103800 Sobic009G103800 Sobic005G126701--Sobic009G103800 Sobic005G126701--Sobic001G166900 Sobic004G349550 Sobic004G349550 Sobic005G126701--Sobic004G349550 Sobic006G167700 Sobic006G167700 Sobic005G126701--Sobic006G167700 Sobic003G100000 Sobic003G100000 Sobic001G254700--Sobic003G100000 Sobic009G250500 Sobic009G250500 Sobic001G254700--Sobic009G250500 Sobic005G073700 Sobic005G073700 Sobic001G254700--Sobic005G073700 Sobic003G398200 Sobic003G398200 Sobic001G254700--Sobic003G398200 Sobic001G254700--Sobic007G025600 Sobic001G254700--Sobic001G254800 Sobic001G254700--Sobic009G103800 Sobic010G131500 Sobic010G131500 Sobic001G254700--Sobic010G131500 Sobic002G184700 Sobic002G184700 Sobic001G254700--Sobic002G184700 Sobic006G083900--Sobic006G234433 Sobic006G083900--Sobic008G149300 Sobic006G083900--Sobic004G349550 Sobic010G053400 Sobic010G053400 Sobic006G083900--Sobic010G053400 Sobic001G122600 Sobic001G122600 Sobic006G083900--Sobic001G122600 Sobic007G025600--Sobic001G254800 Sobic007G025600--Sobic009G103800 Sobic007G025600--Sobic006G167700 Sobic007G025600--Sobic004G349550 Sobic001G344300 Sobic001G344300 Sobic007G025600--Sobic001G344300 Sobic007G025600--Sobic008G149300 Sobic007G025600--Sobic002G184700 Sobic007G025600--Sobic001G166900 Sobic007G025600--Sobic001G534200 Sobic001G534200--Sobic006G167700 Sobic001G534200--Sobic002G184700 Sobic001G534200--Sobic009G103800 Sobic001G534200--Sobic001G166900 Sobic001G534200--Sobic001G344300 Sobic003G372600 Sobic003G372600 Sobic001G534200--Sobic003G372600 Sobic001G208500 Sobic001G208500 Sobic001G534200--Sobic001G208500 Sobic002G211300 Sobic002G211300 Sobic001G534200--Sobic002G211300 Sobic010G198900 Sobic010G198900 Sobic001G534200--Sobic010G198900
Octagon: transcription factors


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