Gene annotation
Transcriptome id Sobic.003G427200.1
Synonym
Functional annotation uridine 5-monophosphate synthase, putative, expressed
UniProt A0A1B6Q869
Pfam PF00156 PF00168 PF01412 PF00215
Panther DB PTHR19278 PTHR19278:SF39
NCBI CDD KOG1377; Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase
KEGG Orthology K13421; uridine monophosphate synthetase K12486stromal membrane-associated protein
Gene Ontology GO:0009116; nucleoside metabolic process GO:0005515protein binding GO:0005096GTPase activator activity GO:0006207'de novo' pyrimidine nucleobase biosynthetic process GO:0004590orotidine-5'-phosphate decarboxylase activity


Orthologs (automatic annotation)
TAIR AT3G54470 : uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
RAP-DB (Rice) LOC_Os01g72240.1 : uridine 5-monophosphate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a025985 , Zm00025a025984 , Zm00025a039123 , Zm00025a039124
Brachypodium KQK11577 , KQK11576 , KQK11572 , PNT73609 , KQK11573
Barley HORVU3Hr1G108360.3 , HORVU3Hr1G108360.2 , HORVU3Hr1G108360.1 , HORVU3Hr1G108360.7 , HORVU3Hr1G108360.6 , HORVU3Hr1G108360.5 , HORVU3Hr1G108360.4 , HORVU3Hr1G108360.9 , HORVU3Hr1G108360.8 , HORVU3Hr1G108390.2 , HORVU3Hr1G108390.3 , HORVU3Hr1G108390.1 , HORVU3Hr1G108360.13 , HORVU3Hr1G108360.12 , HORVU3Hr1G108360.11 , HORVU3Hr1G108360.10
Wheat TraesCS3D02G494000 , TraesCS3D02G492900 , TraesCS3B02G547500 , TraesCS3D02G494100 , TraesCS3D02G493700 , TraesCS3B02G548000 , TraesCS3B02G547300 , TraesCS3B02G547900 , TraesCS3B02G547900
Populus -


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cDNA sequences
Sobic.003G427200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G291200 - -
2 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
3 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
4 Sobic.004G033200 expressed protein -
5 Sobic.009G241900 oleosin, putative, expressed -
6 Sobic.010G211200 ZOS6-06 - C2H2 zinc finger protein, expressed -
7 Sobic.001G508200 multidrug resistance-associated protein, putative, expressed -
8 Sobic.007G053100 amino acid permease family protein, putative, expressed -
9 Sobic.004G123200 MYB family transcription factor, putative, expressed -
10 Sobic.006G017800 ELM2 domain containing protein, putative, expressed -
11 Sobic.005G078132 - -
12 Sobic.004G200700 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
13 Sobic.002G394900 gibberellin receptor GID1L2, putative, expressed -
14 Sobic.001G393101 - -
15 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
16 Sobic.006G217800 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.009G052200 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
18 Sobic.004G222150 - -
19 Sobic.009G208600 POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
20 Sobic.003G427000 early-responsive to dehydration protein-related, putative, expressed -


Gene co-expression network
sample Sobic003G427200 Sobic003G427200 Sobic004G291200 Sobic004G291200 Sobic003G427200--Sobic004G291200 Sobic002G266300 Sobic002G266300 Sobic003G427200--Sobic002G266300 Sobic010G024600 Sobic010G024600 Sobic003G427200--Sobic010G024600 Sobic004G033200 Sobic004G033200 Sobic003G427200--Sobic004G033200 Sobic009G241900 Sobic009G241900 Sobic003G427200--Sobic009G241900 Sobic010G211200 Sobic010G211200 Sobic003G427200--Sobic010G211200 Sobic001G508200 Sobic001G508200 Sobic003G427200--Sobic001G508200 Sobic007G053100 Sobic007G053100 Sobic003G427200--Sobic007G053100 Sobic004G123200 Sobic004G123200 Sobic003G427200--Sobic004G123200 Sobic004G291200--Sobic004G123200 Sobic009G012500 Sobic009G012500 Sobic004G291200--Sobic009G012500 Sobic004G291200--Sobic010G024600 Sobic004G291200--Sobic002G266300 Sobic006G217800 Sobic006G217800 Sobic004G291200--Sobic006G217800 Sobic004G291200--Sobic009G241900 Sobic005G078132 Sobic005G078132 Sobic004G291200--Sobic005G078132 Sobic005G021000 Sobic005G021000 Sobic004G291200--Sobic005G021000 Sobic004G291200--Sobic003G427200 Sobic002G266300--Sobic006G217800 Sobic002G266300--Sobic005G021000 Sobic001G534200 Sobic001G534200 Sobic002G266300--Sobic001G534200 Sobic001G254800 Sobic001G254800 Sobic002G266300--Sobic001G254800 Sobic001G125400 Sobic001G125400 Sobic002G266300--Sobic001G125400 Sobic009G025500 Sobic009G025500 Sobic002G266300--Sobic009G025500 Sobic002G266300--Sobic007G053100 Sobic003G398200 Sobic003G398200 Sobic002G266300--Sobic003G398200 Sobic006G208000 Sobic006G208000 Sobic002G266300--Sobic006G208000 Sobic010G024600--Sobic002G266300 Sobic010G024600--Sobic006G208000 Sobic010G024600--Sobic001G508200 Sobic010G024600--Sobic005G021000 Sobic004G347500 Sobic004G347500 Sobic010G024600--Sobic004G347500 Sobic001G004600 Sobic001G004600 Sobic010G024600--Sobic001G004600 Sobic010G024600--Sobic004G291200 Sobic010G024600--Sobic009G025500 Sobic001G044300 Sobic001G044300 Sobic010G024600--Sobic001G044300 Sobic004G033200--Sobic002G266300 Sobic004G033200--Sobic007G053100 Sobic008G191850 Sobic008G191850 Sobic004G033200--Sobic008G191850 Sobic004G033200--Sobic010G024600 Sobic004G066500 Sobic004G066500 Sobic004G033200--Sobic004G066500 Sobic004G033200--Sobic001G508200 Sobic009G052600 Sobic009G052600 Sobic004G033200--Sobic009G052600 Sobic008G116600 Sobic008G116600 Sobic004G033200--Sobic008G116600 Sobic004G033200--Sobic004G347500 Sobic003G427000 Sobic003G427000 Sobic009G241900--Sobic003G427000 Sobic008G191700 Sobic008G191700 Sobic009G241900--Sobic008G191700 Sobic009G241900--Sobic010G211200 Sobic005G206100 Sobic005G206100 Sobic009G241900--Sobic005G206100 Sobic001G393101 Sobic001G393101 Sobic009G241900--Sobic001G393101 Sobic005G212201 Sobic005G212201 Sobic009G241900--Sobic005G212201 Sobic009G241900--Sobic006G217800 Sobic004G222150 Sobic004G222150 Sobic009G241900--Sobic004G222150 Sobic009G241900--Sobic005G078132 Sobic010G211200--Sobic004G222150 Sobic010G211200--Sobic009G241900 Sobic010G211200--Sobic008G191700 Sobic010G211200--Sobic003G427000 Sobic010G211200--Sobic005G212201 Sobic002G064800 Sobic002G064800 Sobic010G211200--Sobic002G064800 Sobic010G211200--Sobic005G206100 Sobic003G285900 Sobic003G285900 Sobic010G211200--Sobic003G285900 Sobic010G211200--Sobic001G393101 Sobic006G013300 Sobic006G013300 Sobic001G508200--Sobic006G013300 Sobic001G508200--Sobic004G347500 Sobic009G208600 Sobic009G208600 Sobic001G508200--Sobic009G208600 Sobic001G508200--Sobic005G021000 Sobic001G508200--Sobic006G208000 Sobic001G508200--Sobic002G266300 Sobic001G508200--Sobic010G024600 Sobic003G098300 Sobic003G098300 Sobic001G508200--Sobic003G098300 Sobic003G427300 Sobic003G427300 Sobic001G508200--Sobic003G427300 Sobic007G053100--Sobic002G266300 Sobic006G251500 Sobic006G251500 Sobic007G053100--Sobic006G251500 Sobic006G053200 Sobic006G053200 Sobic007G053100--Sobic006G053200 Sobic007G053100--Sobic001G125400 Sobic005G045700 Sobic005G045700 Sobic007G053100--Sobic005G045700 Sobic007G053100--Sobic004G033200 Sobic007G053100--Sobic003G427300 Sobic007G053100--Sobic004G066500 Sobic002G127900 Sobic002G127900 Sobic007G053100--Sobic002G127900 Sobic002G055800 Sobic002G055800 Sobic004G123200--Sobic002G055800 Sobic004G123200--Sobic009G012500 Sobic004G123200--Sobic004G222150 Sobic006G083900 Sobic006G083900 Sobic004G123200--Sobic006G083900 Sobic006G226000 Sobic006G226000 Sobic004G123200--Sobic006G226000 Sobic002G256900 Sobic002G256900 Sobic004G123200--Sobic002G256900 Sobic004G123200--Sobic006G217800 Sobic004G123200--Sobic002G266300 Sobic004G123200--Sobic001G393101
Octagon: transcription factors


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