Gene annotation
Transcriptome id Sobic.003G427300.1
Synonym Sb03g045940
Functional annotation uridine 5-monophosphate synthase, putative, expressed
UniProt C5XHW8
Pfam PF00156 PF00215
Panther DB PTHR19278 PTHR19278:SF39
NCBI CDD KOG1377; Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase
KEGG Orthology K13421; uridine monophosphate synthetase
Gene Ontology GO:0009116; nucleoside metabolic process GO:0006207'de novo' pyrimidine nucleobase biosynthetic process GO:0004590orotidine-5'-phosphate decarboxylase activity


Orthologs (automatic annotation)
TAIR AT3G54470 : uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)
RAP-DB (Rice) LOC_Os01g72240.1 : uridine 5-monophosphate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a039123 , Zm00025a025985 , Zm00025a025984
Brachypodium KQK11573
Barley HORVU3Hr1G108360.10 , HORVU3Hr1G108360.6 , HORVU3Hr1G108390.2 , HORVU3Hr1G108390.3 , HORVU3Hr1G108390.1 , HORVU3Hr1G108360.2 , HORVU3Hr1G108360.1 , HORVU3Hr1G108360.7 , HORVU3Hr1G108360.3 , HORVU3Hr1G108360.5 , HORVU3Hr1G108360.4 , HORVU3Hr1G108360.9 , HORVU3Hr1G108360.8
Wheat TraesCS3B02G547300 , TraesCS3D02G493700 , TraesCS3D02G494000 , TraesCS3B02G547900 , TraesCS3B02G547900 , TraesCS3B02G547500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G208000 DNA repair ATPase-related, putative, expressed -
2 Sobic.001G508200 multidrug resistance-associated protein, putative, expressed -
3 Sobic.002G266300 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed -
4 Sobic.009G025500 OsRCI2-7 - Putative low temperature and salt responsive protein, expressed -
5 Sobic.001G044300 transcription factor, putative, expressed K09060: plant G-box-binding factor
6 Sobic.002G405700 expressed protein -
7 Sobic.005G134700 chalcone and stilbene synthases, putative, expressed -
8 Sobic.003G098300 hydroxyproline-rich glycoprotein family protein, putative, expressed -
9 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
10 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
11 Sobic.007G025600 amino acid transporter, putative, expressed -
12 Sobic.001G254800 cytochrome P450, putative, expressed -
13 Sobic.001G004600 expressed protein -
14 Sobic.007G053100 amino acid permease family protein, putative, expressed -
15 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
16 Sobic.006G167700 oleosin, putative, expressed -
17 Sobic.001G344300 - -
18 Sobic.001G534200 - -
19 Sobic.002G184700 expressed protein -
20 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -


Gene co-expression network
sample Sobic003G427300 Sobic003G427300 Sobic006G208000 Sobic006G208000 Sobic003G427300--Sobic006G208000 Sobic001G508200 Sobic001G508200 Sobic003G427300--Sobic001G508200 Sobic002G266300 Sobic002G266300 Sobic003G427300--Sobic002G266300 Sobic009G025500 Sobic009G025500 Sobic003G427300--Sobic009G025500 Sobic001G044300 Sobic001G044300 Sobic003G427300--Sobic001G044300 Sobic002G405700 Sobic002G405700 Sobic003G427300--Sobic002G405700 Sobic005G134700 Sobic005G134700 Sobic003G427300--Sobic005G134700 Sobic003G098300 Sobic003G098300 Sobic003G427300--Sobic003G098300 Sobic010G198900 Sobic010G198900 Sobic003G427300--Sobic010G198900 Sobic006G208000--Sobic009G025500 Sobic001G004600 Sobic001G004600 Sobic006G208000--Sobic001G004600 Sobic001G534200 Sobic001G534200 Sobic006G208000--Sobic001G534200 Sobic006G208000--Sobic010G198900 Sobic005G021000 Sobic005G021000 Sobic006G208000--Sobic005G021000 Sobic009G246250 Sobic009G246250 Sobic006G208000--Sobic009G246250 Sobic008G149300 Sobic008G149300 Sobic006G208000--Sobic008G149300 Sobic006G167700 Sobic006G167700 Sobic006G208000--Sobic006G167700 Sobic009G103800 Sobic009G103800 Sobic006G208000--Sobic009G103800 Sobic006G013300 Sobic006G013300 Sobic001G508200--Sobic006G013300 Sobic004G347500 Sobic004G347500 Sobic001G508200--Sobic004G347500 Sobic009G208600 Sobic009G208600 Sobic001G508200--Sobic009G208600 Sobic001G508200--Sobic005G021000 Sobic001G508200--Sobic006G208000 Sobic001G508200--Sobic002G266300 Sobic010G024600 Sobic010G024600 Sobic001G508200--Sobic010G024600 Sobic001G508200--Sobic003G098300 Sobic001G508200--Sobic003G427300 Sobic006G217800 Sobic006G217800 Sobic002G266300--Sobic006G217800 Sobic002G266300--Sobic005G021000 Sobic002G266300--Sobic001G534200 Sobic001G254800 Sobic001G254800 Sobic002G266300--Sobic001G254800 Sobic001G125400 Sobic001G125400 Sobic002G266300--Sobic001G125400 Sobic002G266300--Sobic009G025500 Sobic007G053100 Sobic007G053100 Sobic002G266300--Sobic007G053100 Sobic003G398200 Sobic003G398200 Sobic002G266300--Sobic003G398200 Sobic002G266300--Sobic006G208000 Sobic009G025500--Sobic010G198900 Sobic009G025500--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic009G025500--Sobic002G184700 Sobic002G211300 Sobic002G211300 Sobic009G025500--Sobic002G211300 Sobic010G125000 Sobic010G125000 Sobic009G025500--Sobic010G125000 Sobic001G344300 Sobic001G344300 Sobic009G025500--Sobic001G344300 Sobic001G166900 Sobic001G166900 Sobic009G025500--Sobic001G166900 Sobic003G372600 Sobic003G372600 Sobic009G025500--Sobic003G372600 Sobic009G025500--Sobic001G534200 Sobic009G037100 Sobic009G037100 Sobic001G044300--Sobic009G037100 Sobic001G044300--Sobic009G025500 Sobic005G165700 Sobic005G165700 Sobic001G044300--Sobic005G165700 Sobic004G164800 Sobic004G164800 Sobic001G044300--Sobic004G164800 Sobic001G044300--Sobic010G198900 Sobic001G044300--Sobic003G372600 Sobic003G144500 Sobic003G144500 Sobic001G044300--Sobic003G144500 Sobic001G498900 Sobic001G498900 Sobic001G044300--Sobic001G498900 Sobic001G044300--Sobic010G125000 Sobic002G405700--Sobic005G134700 Sobic001G122600 Sobic001G122600 Sobic002G405700--Sobic001G122600 Sobic005G134700--Sobic002G405700 Sobic005G134700--Sobic001G122600 Sobic003G098300--Sobic004G347500 Sobic003G098300--Sobic005G021000 Sobic003G098300--Sobic006G208000 Sobic001G336200 Sobic001G336200 Sobic003G098300--Sobic001G336200 Sobic003G419500 Sobic003G419500 Sobic003G098300--Sobic003G419500 Sobic002G232900 Sobic002G232900 Sobic003G098300--Sobic002G232900 Sobic003G098300--Sobic001G508200 Sobic003G098300--Sobic009G025500 Sobic002G240000 Sobic002G240000 Sobic003G098300--Sobic002G240000 Sobic006G248000 Sobic006G248000 Sobic010G198900--Sobic006G248000 Sobic010G198900--Sobic003G372600 Sobic010G198900--Sobic006G167700 Sobic010G198900--Sobic001G166900 Sobic010G198900--Sobic002G211300 Sobic002G046000 Sobic002G046000 Sobic010G198900--Sobic002G046000 Sobic010G198900--Sobic002G184700 Sobic010G198900--Sobic010G125000 Sobic010G198900--Sobic009G103800
Octagon: transcription factors


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