Gene annotation
| Transcriptome id | Sobic.003G363400.1 |
|---|---|
| Synonym | Sb03g040510, ABF1 |
| Functional annotation | bZIP transcription factor, putative, expressed |
| UniProt | A0A1B6Q731 |
| Pfam | PF00170 |
| Panther DB | PTHR22952 PTHR22952:SF187 |
| NCBI CDD | - |
| KEGG Orthology | K14432; ABA responsive element binding factor |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity |
Orthologs (automatic annotation)
| TAIR | AT1G49720 : abscisic acid responsive element-binding factor 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g64000.1 : bZIP transcription factor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a039590 , Zm00025a049221 , Zm00025a026769 |
| Brachypodium | - |
| Barley | HORVU3Hr1G084360.1 , HORVU3Hr1G084360.2 , HORVU3Hr1G084360.3 , HORVU3Hr1G084360.4 , HORVU3Hr1G084360.5 , HORVU3Hr1G084360.6 , HORVU3Hr1G084360.7 |
| Wheat | TraesCS3B02G404200 , TraesCS3B02G404500 , TraesCS3B02G404400 , TraesCS2A02G099400 , TraesCS2D02G098700 , TraesCS3B02G404300 , TraesCS2B02G115700 |
| Populus | - |
JBrowse
| Sobic.003G363400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G107900 | uncharacterized Cys-rich domain containing protein, putative, expressed | - |
| 2 | Sobic.002G302300 | cysteine proteinase A494 precursor, putative, expressed | K01373: cathepsin F |
| 3 | Sobic.007G075250 | - | - |
| 4 | Sobic.003G400400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cysteine proteinase inhibitor precursor protein, putative, expressed | - |
| 5 | Sobic.001G017500 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | - |
| 6 | Sobic.002G111400 | heavy metal-associated domain containing protein, expressed | - |
| 7 | Sobic.001G088600 | universal stress protein domain containing protein, putative, expressed | - |
| 8 | Sobic.009G209400 | ubiquinone oxidoreductase, putative, expressed | K03940: NADH dehydrogenase (ubiquinone) Fe-S protein 7 |
| 9 | Sobic.001G485200 | AP2 domain containing protein, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 10 | Sobic.010G106601 | - | K09422: transcription factor MYB, plant |
| 11 | Sobic.002G317500 | protein phosphatase 2C, putative, expressed | K17506: PPM1L, protein phosphatase 1L |
| 12 | Sobic.002G118300 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@AWPM-19-like membrane family protein, putative, expressed | - |
| 13 | Sobic.002G391100 | Thioredoxin peroxidase (Os)(PubMedID : 27208977)@peroxiredoxin, putative, expressed | K11188: peroxiredoxin 6 |
| 14 | Sobic.003G236200 | oleosin, putative, expressed | - |
| 15 | Sobic.004G071050 | - | - |
| 16 | Sobic.003G283700 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@DUF1264 domain containing protein, putative, expressed | - |
| 17 | Sobic.007G162700 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 18 | Sobic.003G399500 | OsFBX59 - F-box domain containing protein, expressed | - |
| 19 | Sobic.009G191801 | - | - |
| 20 | Sobic.003G295600 | DUF1264 domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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