Gene annotation
Transcriptome id Sobic.009G250500.1
Synonym Sb09g030120
Functional annotation expressed protein
UniProt A0A1B6PAA0
Pfam -
Panther DB PTHR34967 PTHR34967:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24130 : -
RAP-DB (Rice) LOC_Os05g50940.1 : expressed protein
MaizeGDB (Corn) Zm00025a036744
Brachypodium KQK04631
Barley HORVU6Hr1G076620.1 , HORVU6Hr1G076620.3 , HORVU6Hr1G076620.2 , HORVU1Hr1G093170.2 , HORVU1Hr1G093170.1
Wheat TraesCS1B02G461700 , TraesCS1D02G436600 , TraesCS1A02G426800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G250500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G131500 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
2 Sobic.003G398200 B3 DNA binding domain containing protein, expressed -
3 Sobic.003G437400 The major cationic peroxidase in sorghum grain (SPC4)(PubMedID : 16650004)@peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.001G058800 cysteine proteinase EP-B 1 precursor, putative, expressed -
5 Sobic.003G098800 osMFT2 MFT-Like2 homologous to Mother of FT and TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
6 Sobic.003G051400 cytochrome c oxidase polypeptide Vc, putative, expressed -
7 Sobic.006G143600 similar to OSIGBa0157K09-H0214G12.13 protein(PubMedID : 29862293)@caleosin related protein, putative, expressed K17991: peroxygenase
8 Sobic.006G248100 lipase, putative, expressed -
9 Sobic.003G100000 Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed K05350: beta-glucosidase
10 Sobic.001G254700 TPD1, putative, expressed -
11 Sobic.001G208500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
12 Sobic.001G380800 cupin domain containing protein, expressed -
13 Sobic.002G393100 dehydrogenase/reductase, putative, expressed -
14 Sobic.003G372600 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
15 Sobic.010G269950 - -
16 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -
17 Sobic.002G184700 expressed protein -
18 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
19 Sobic.007G162700 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.001G126900 oleosin, putative, expressed -


Gene co-expression network
sample Sobic009G250500 Sobic009G250500 Sobic010G131500 Sobic010G131500 Sobic009G250500--Sobic010G131500 Sobic003G398200 Sobic003G398200 Sobic009G250500--Sobic003G398200 Sobic003G437400 Sobic003G437400 Sobic009G250500--Sobic003G437400 Sobic001G058800 Sobic001G058800 Sobic009G250500--Sobic001G058800 Sobic003G098800 Sobic003G098800 Sobic009G250500--Sobic003G098800 Sobic003G051400 Sobic003G051400 Sobic009G250500--Sobic003G051400 Sobic006G143600 Sobic006G143600 Sobic009G250500--Sobic006G143600 Sobic006G248100 Sobic006G248100 Sobic009G250500--Sobic006G248100 Sobic003G100000 Sobic003G100000 Sobic009G250500--Sobic003G100000 Sobic010G131500--Sobic003G437400 Sobic010G131500--Sobic003G098800 Sobic010G131500--Sobic009G250500 Sobic010G131500--Sobic003G051400 Sobic010G131500--Sobic001G058800 Sobic001G380800 Sobic001G380800 Sobic010G131500--Sobic001G380800 Sobic010G131500--Sobic003G398200 Sobic010G131500--Sobic006G248100 Sobic004G301800 Sobic004G301800 Sobic010G131500--Sobic004G301800 Sobic003G398200--Sobic009G250500 Sobic003G398200--Sobic010G131500 Sobic003G398200--Sobic006G248100 Sobic003G398200--Sobic001G058800 Sobic003G398200--Sobic003G437400 Sobic001G208500 Sobic001G208500 Sobic003G398200--Sobic001G208500 Sobic003G398200--Sobic003G051400 Sobic003G372600 Sobic003G372600 Sobic003G398200--Sobic003G372600 Sobic010G198900 Sobic010G198900 Sobic003G398200--Sobic010G198900 Sobic003G437400--Sobic010G131500 Sobic003G437400--Sobic003G098800 Sobic003G437400--Sobic003G051400 Sobic003G437400--Sobic001G380800 Sobic003G437400--Sobic004G301800 Sobic003G437400--Sobic001G058800 Sobic003G437400--Sobic006G248100 Sobic003G295600 Sobic003G295600 Sobic003G437400--Sobic003G295600 Sobic002G393100 Sobic002G393100 Sobic003G437400--Sobic002G393100 Sobic005G165700 Sobic005G165700 Sobic001G058800--Sobic005G165700 Sobic001G058800--Sobic003G437400 Sobic001G058800--Sobic001G380800 Sobic009G037100 Sobic009G037100 Sobic001G058800--Sobic009G037100 Sobic001G058800--Sobic010G131500 Sobic004G164800 Sobic004G164800 Sobic001G058800--Sobic004G164800 Sobic001G058800--Sobic003G051400 Sobic001G058800--Sobic001G208500 Sobic001G058800--Sobic003G372600 Sobic003G098800--Sobic003G437400 Sobic003G098800--Sobic010G131500 Sobic003G098800--Sobic003G295600 Sobic003G098800--Sobic001G380800 Sobic003G283700 Sobic003G283700 Sobic003G098800--Sobic003G283700 Sobic003G098800--Sobic004G301800 Sobic002G391100 Sobic002G391100 Sobic003G098800--Sobic002G391100 Sobic003G098800--Sobic003G051400 Sobic010G142900 Sobic010G142900 Sobic003G098800--Sobic010G142900 Sobic003G051400--Sobic003G437400 Sobic010G269950 Sobic010G269950 Sobic003G051400--Sobic010G269950 Sobic003G051400--Sobic010G131500 Sobic003G051400--Sobic001G380800 Sobic003G051400--Sobic006G248100 Sobic003G051400--Sobic002G393100 Sobic003G051400--Sobic001G208500 Sobic003G051400--Sobic003G098800 Sobic003G051400--Sobic001G058800 Sobic007G162700 Sobic007G162700 Sobic006G143600--Sobic007G162700 Sobic001G126900 Sobic001G126900 Sobic006G143600--Sobic001G126900 Sobic006G143600--Sobic001G058800 Sobic006G143600--Sobic010G269950 Sobic006G143600--Sobic003G283700 Sobic006G143600--Sobic003G295600 Sobic003G144500 Sobic003G144500 Sobic006G143600--Sobic003G144500 Sobic006G143600--Sobic010G142900 Sobic006G143600--Sobic003G437400 Sobic006G248100--Sobic001G208500 Sobic006G248100--Sobic002G393100 Sobic006G248100--Sobic003G051400 Sobic006G248100--Sobic003G372600 Sobic006G248100--Sobic004G164800 Sobic008G159000 Sobic008G159000 Sobic006G248100--Sobic008G159000 Sobic006G248100--Sobic009G037100 Sobic002G401400 Sobic002G401400 Sobic006G248100--Sobic002G401400 Sobic002G184700 Sobic002G184700 Sobic006G248100--Sobic002G184700 Sobic001G254700 Sobic001G254700 Sobic003G100000--Sobic001G254700 Sobic003G100000--Sobic009G250500 Sobic005G073700 Sobic005G073700 Sobic003G100000--Sobic005G073700 Sobic003G100000--Sobic003G398200 Sobic010G054800 Sobic010G054800 Sobic003G100000--Sobic010G054800 Sobic003G100000--Sobic010G131500 Sobic007G025600 Sobic007G025600 Sobic003G100000--Sobic007G025600 Sobic001G254800 Sobic001G254800 Sobic003G100000--Sobic001G254800 Sobic007G050900 Sobic007G050900 Sobic003G100000--Sobic007G050900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.