Gene annotation
Transcriptome id Sobic.004G242200.3,Sobic.004G242200.2,Sobic.004G242200.1
Synonym Sb04g028300
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
nucleobase-ascorbate transporter, putative, expressed
UniProt C5XYW8 , A0A1Z5RPW3
Pfam PF00860
Panther DB PTHR11119 PTHR11119:SF48
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT5G62890 : Xanthine/uracil permease family protein
RAP-DB (Rice) LOC_Os02g50820.1 : nucleobase-ascorbate transporter, putative, expressed
MaizeGDB (Corn) Zm00025a021999 , Zm00025a021456 , Zm00025a049635
Brachypodium PNT69652 , KQK01974
Barley -
Wheat TraesCS6B02G339000 , TraesCS6D02G288700 , TraesCS6A02G309300
Populus PNT39776 , PNT39777 , PNT12171 , PNT12170 , PNT39778


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cDNA sequences
Sobic.004G242200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G420400 - -
2 Sobic.001G456400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein of unknown function DUF1675 domain containing protein, expressed -
3 Sobic.005G036200 protein of unknown function containing protein, expressed -
4 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
5 Sobic.001G375800 expressed protein -
6 Sobic.007G192200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@LTPL80 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.004G339900 expressed protein -
8 Sobic.010G152000 powdery mildew resistant protein 5, putative, expressed -
9 Sobic.004G071050 - -
10 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
11 Sobic.001G485200 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
12 Sobic.005G018050 - -
13 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G343000 expressed protein -
15 Sobic.003G379900 plus-3 domain containing protein, putative, expressed -
16 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G118100 kelch repeat protein, putative, expressed -
18 Sobic.009G225500 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
19 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
20 Sobic.007G199800 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic004G242200 Sobic004G242200 Sobic002G420400 Sobic002G420400 Sobic004G242200--Sobic002G420400 Sobic001G456400 Sobic001G456400 Sobic004G242200--Sobic001G456400 Sobic005G036200 Sobic005G036200 Sobic004G242200--Sobic005G036200 Sobic009G002200 Sobic009G002200 Sobic004G242200--Sobic009G002200 Sobic001G375800 Sobic001G375800 Sobic004G242200--Sobic001G375800 Sobic007G192200 Sobic007G192200 Sobic004G242200--Sobic007G192200 Sobic004G339900 Sobic004G339900 Sobic004G242200--Sobic004G339900 Sobic010G152000 Sobic010G152000 Sobic004G242200--Sobic010G152000 Sobic004G071050 Sobic004G071050 Sobic004G242200--Sobic004G071050 Sobic002G420400--Sobic004G339900 Sobic002G420400--Sobic004G071050 Sobic002G420400--Sobic005G036200 Sobic002G420400--Sobic004G242200 Sobic001G485200 Sobic001G485200 Sobic002G420400--Sobic001G485200 Sobic003G379900 Sobic003G379900 Sobic002G420400--Sobic003G379900 Sobic002G420400--Sobic001G375800 Sobic002G420400--Sobic010G152000 Sobic001G194100 Sobic001G194100 Sobic002G420400--Sobic001G194100 Sobic001G456400--Sobic004G242200 Sobic001G456400--Sobic005G036200 Sobic001G456400--Sobic001G375800 Sobic001G456400--Sobic009G002200 Sobic001G456400--Sobic002G420400 Sobic001G456400--Sobic010G152000 Sobic003G084200 Sobic003G084200 Sobic001G456400--Sobic003G084200 Sobic009G233000 Sobic009G233000 Sobic001G456400--Sobic009G233000 Sobic001G456400--Sobic003G379900 Sobic005G036200--Sobic007G192200 Sobic005G036200--Sobic002G420400 Sobic005G036200--Sobic009G002200 Sobic005G036200--Sobic001G375800 Sobic010G054800 Sobic010G054800 Sobic005G036200--Sobic010G054800 Sobic005G036200--Sobic001G456400 Sobic009G250500 Sobic009G250500 Sobic005G036200--Sobic009G250500 Sobic005G036200--Sobic004G242200 Sobic010G131500 Sobic010G131500 Sobic005G036200--Sobic010G131500 Sobic007G050800 Sobic007G050800 Sobic009G002200--Sobic007G050800 Sobic003G290400 Sobic003G290400 Sobic009G002200--Sobic003G290400 Sobic004G282601 Sobic004G282601 Sobic009G002200--Sobic004G282601 Sobic006G135800 Sobic006G135800 Sobic009G002200--Sobic006G135800 Sobic009G002200--Sobic005G036200 Sobic005G153000 Sobic005G153000 Sobic009G002200--Sobic005G153000 Sobic009G002200--Sobic001G375800 Sobic004G078500 Sobic004G078500 Sobic009G002200--Sobic004G078500 Sobic010G037901 Sobic010G037901 Sobic009G002200--Sobic010G037901 Sobic001G375800--Sobic005G036200 Sobic001G375800--Sobic001G456400 Sobic001G375800--Sobic009G002200 Sobic001G375800--Sobic002G420400 Sobic010G033500 Sobic010G033500 Sobic001G375800--Sobic010G033500 Sobic001G375800--Sobic004G242200 Sobic001G375800--Sobic003G379900 Sobic001G375800--Sobic001G485200 Sobic001G375800--Sobic004G339900 Sobic007G192200--Sobic005G036200 Sobic007G192200--Sobic006G135800 Sobic003G140800 Sobic003G140800 Sobic007G192200--Sobic003G140800 Sobic007G192200--Sobic009G002200 Sobic006G226000 Sobic006G226000 Sobic007G192200--Sobic006G226000 Sobic009G012600 Sobic009G012600 Sobic007G192200--Sobic009G012600 Sobic007G192200--Sobic004G242200 Sobic005G102800 Sobic005G102800 Sobic007G192200--Sobic005G102800 Sobic009G031800 Sobic009G031800 Sobic007G192200--Sobic009G031800 Sobic004G339900--Sobic002G420400 Sobic004G339900--Sobic004G071050 Sobic004G339900--Sobic001G485200 Sobic004G339900--Sobic001G194100 Sobic004G339900--Sobic010G152000 Sobic007G041200 Sobic007G041200 Sobic004G339900--Sobic007G041200 Sobic008G116100 Sobic008G116100 Sobic004G339900--Sobic008G116100 Sobic004G065800 Sobic004G065800 Sobic004G339900--Sobic004G065800 Sobic004G163700 Sobic004G163700 Sobic004G339900--Sobic004G163700 Sobic010G152000--Sobic004G339900 Sobic010G152000--Sobic002G420400 Sobic010G152000--Sobic004G071050 Sobic010G152000--Sobic005G036200 Sobic010G152000--Sobic001G456400 Sobic010G152000--Sobic004G242200 Sobic010G152000--Sobic001G485200 Sobic003G071901 Sobic003G071901 Sobic010G152000--Sobic003G071901 Sobic010G152000--Sobic004G065800 Sobic004G071050--Sobic001G485200 Sobic010G106601 Sobic010G106601 Sobic004G071050--Sobic010G106601 Sobic004G071050--Sobic002G420400 Sobic004G071050--Sobic004G339900 Sobic009G033500 Sobic009G033500 Sobic004G071050--Sobic009G033500 Sobic009G253800 Sobic009G253800 Sobic004G071050--Sobic009G253800 Sobic004G071050--Sobic004G065800 Sobic006G107900 Sobic006G107900 Sobic004G071050--Sobic006G107900 Sobic007G091200 Sobic007G091200 Sobic004G071050--Sobic007G091200
Octagon: transcription factors


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