Gene annotation
Transcriptome id Sobic.003G084200.1
Synonym Sb03g007100
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6Q217
Pfam PF14383 PF14309
Panther DB PTHR21726 PTHR21726:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67040 : -
RAP-DB (Rice) LOC_Os01g04160.1 : expressed protein
MaizeGDB (Corn) Zm00025a023597 , Zm00025a035570
Brachypodium KQK02549
Barley HORVU3Hr1G007200.2 , HORVU3Hr1G007200.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G084200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G104500 growth-regulating factor, putative, expressed -
2 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
3 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
4 Sobic.005G157300 protein binding protein, putative, expressed -
5 Sobic.002G168000 expressed protein -
6 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
7 Sobic.003G244000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
8 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
9 Sobic.001G456400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein of unknown function DUF1675 domain containing protein, expressed -
10 Sobic.004G207766 - -
11 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
12 Sobic.001G460100 heparanase-like protein precursor, putative, expressed K07964: heparanase
13 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
14 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
15 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
16 Sobic.002G131100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@N-rich protein, putative, expressed -
17 Sobic.009G060600 - -
18 Sobic.008G118100 kelch repeat protein, putative, expressed -
19 Sobic.004G282601 - -
20 Sobic.002G158500 ankyrin, putative, expressed -


Gene co-expression network
sample Sobic003G084200 Sobic003G084200 Sobic001G104500 Sobic001G104500 Sobic003G084200--Sobic001G104500 Sobic007G050800 Sobic007G050800 Sobic003G084200--Sobic007G050800 Sobic006G275500 Sobic006G275500 Sobic003G084200--Sobic006G275500 Sobic005G157300 Sobic005G157300 Sobic003G084200--Sobic005G157300 Sobic002G168000 Sobic002G168000 Sobic003G084200--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic003G084200--Sobic007G187700 Sobic003G244000 Sobic003G244000 Sobic003G084200--Sobic003G244000 Sobic009G002200 Sobic009G002200 Sobic003G084200--Sobic009G002200 Sobic001G456400 Sobic001G456400 Sobic003G084200--Sobic001G456400 Sobic004G282601 Sobic004G282601 Sobic001G104500--Sobic004G282601 Sobic001G104500--Sobic006G275500 Sobic001G104500--Sobic007G187700 Sobic004G317000 Sobic004G317000 Sobic001G104500--Sobic004G317000 Sobic002G256900 Sobic002G256900 Sobic001G104500--Sobic002G256900 Sobic001G104500--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic001G104500--Sobic002G055800 Sobic006G016700 Sobic006G016700 Sobic001G104500--Sobic006G016700 Sobic010G037901 Sobic010G037901 Sobic001G104500--Sobic010G037901 Sobic007G050800--Sobic009G002200 Sobic007G050800--Sobic006G016700 Sobic008G118100 Sobic008G118100 Sobic007G050800--Sobic008G118100 Sobic006G226000 Sobic006G226000 Sobic007G050800--Sobic006G226000 Sobic007G050800--Sobic002G168000 Sobic005G153000 Sobic005G153000 Sobic007G050800--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic007G050800--Sobic006G135800 Sobic007G050800--Sobic007G187700 Sobic009G012600 Sobic009G012600 Sobic007G050800--Sobic009G012600 Sobic006G275500--Sobic006G016700 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic003G147500 Sobic003G147500 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic008G090000 Sobic008G090000 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic009G146250 Sobic009G146250 Sobic006G275500--Sobic009G146250 Sobic009G143200 Sobic009G143200 Sobic005G157300--Sobic009G143200 Sobic003G055600 Sobic003G055600 Sobic005G157300--Sobic003G055600 Sobic003G183700 Sobic003G183700 Sobic005G157300--Sobic003G183700 Sobic001G377700 Sobic001G377700 Sobic005G157300--Sobic001G377700 Sobic001G054700 Sobic001G054700 Sobic005G157300--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic005G157300--Sobic006G221300 Sobic005G157300--Sobic007G187700 Sobic009G172950 Sobic009G172950 Sobic005G157300--Sobic009G172950 Sobic009G127800 Sobic009G127800 Sobic005G157300--Sobic009G127800 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic007G187700--Sobic005G153000 Sobic007G187700--Sobic001G104500 Sobic007G187700--Sobic001G377700 Sobic007G187700--Sobic006G275500 Sobic007G187700--Sobic004G317000 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic001G238900 Sobic001G238900 Sobic003G244000--Sobic001G238900 Sobic003G244000--Sobic001G054700 Sobic007G201900 Sobic007G201900 Sobic003G244000--Sobic007G201900 Sobic002G230800 Sobic002G230800 Sobic003G244000--Sobic002G230800 Sobic002G351100 Sobic002G351100 Sobic003G244000--Sobic002G351100 Sobic001G118800 Sobic001G118800 Sobic003G244000--Sobic001G118800 Sobic003G244000--Sobic009G143200 Sobic003G244000--Sobic005G157300 Sobic003G244000--Sobic004G317000 Sobic009G002200--Sobic007G050800 Sobic003G290400 Sobic003G290400 Sobic009G002200--Sobic003G290400 Sobic009G002200--Sobic004G282601 Sobic009G002200--Sobic006G135800 Sobic005G036200 Sobic005G036200 Sobic009G002200--Sobic005G036200 Sobic009G002200--Sobic005G153000 Sobic001G375800 Sobic001G375800 Sobic009G002200--Sobic001G375800 Sobic004G078500 Sobic004G078500 Sobic009G002200--Sobic004G078500 Sobic009G002200--Sobic010G037901 Sobic004G242200 Sobic004G242200 Sobic001G456400--Sobic004G242200 Sobic001G456400--Sobic005G036200 Sobic001G456400--Sobic001G375800 Sobic001G456400--Sobic009G002200 Sobic002G420400 Sobic002G420400 Sobic001G456400--Sobic002G420400 Sobic010G152000 Sobic010G152000 Sobic001G456400--Sobic010G152000 Sobic001G456400--Sobic003G084200 Sobic009G233000 Sobic009G233000 Sobic001G456400--Sobic009G233000 Sobic003G379900 Sobic003G379900 Sobic001G456400--Sobic003G379900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.