Gene annotation
Transcriptome id Sobic.001G460100.1
Synonym GUS1, Sb01g043180, AtGUS1
Functional annotation heparanase-like protein precursor, putative, expressed
UniProt C5WTN2
Pfam PF03662
Panther DB PTHR14363 PTHR14363:SF19
NCBI CDD -
KEGG Orthology K07964; heparanase
Gene Ontology GO:0016798; hydrolase activity, acting on glycosyl bonds GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT5G61250 : glucuronidase 1
RAP-DB (Rice) LOC_Os03g11320.2 : heparanase-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a001266
Brachypodium KQK22953 , KQK22952 , KQK22951 , PNT77909
Barley HORVU4Hr1G068830.1 , HORVU4Hr1G068830.3 , HORVU4Hr1G068830.2 , HORVU4Hr1G068830.5 , HORVU4Hr1G068830.4 , HORVU4Hr1G068830.7 , HORVU4Hr1G068830.6 , HORVU4Hr1G068830.8 , HORVU4Hr1G068830.11 , HORVU4Hr1G068830.10 , HORVU4Hr1G068830.9
Wheat TraesCS4B02G250500 , TraesCS4D02G250400 , TraesCS4A02G054400 , TraesCS4A02G054400
Populus -


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cDNA sequences
Sobic.001G460100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G177100 expressed protein -
2 Sobic.009G188900 acyltransferase, putative, expressed K13513: LCLAT1, lysocardiolipin and lysophospholipid acyltransferase
3 Sobic.009G113900 expressed protein -
4 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G012600 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
6 Sobic.003G024000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide-N4-asparagine amidase A, putative, expressed -
7 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
8 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
9 Sobic.003G102700 exostosin family protein, putative, expressed -
10 Sobic.009G028100 dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
11 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
12 Sobic.002G168000 expressed protein -
13 Sobic.010G024600 aminomethyltransferase, putative, expressed K06980: tRNA-modifying protein YgfZ
14 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
15 Sobic.001G507000 expressed protein -
16 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
17 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
18 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
19 Sobic.001G425700 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
20 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit


Gene co-expression network
sample Sobic001G460100 Sobic001G460100 Sobic010G177100 Sobic010G177100 Sobic001G460100--Sobic010G177100 Sobic009G188900 Sobic009G188900 Sobic001G460100--Sobic009G188900 Sobic009G113900 Sobic009G113900 Sobic001G460100--Sobic009G113900 Sobic003G084200 Sobic003G084200 Sobic001G460100--Sobic003G084200 Sobic009G012600 Sobic009G012600 Sobic001G460100--Sobic009G012600 Sobic003G024000 Sobic003G024000 Sobic001G460100--Sobic003G024000 Sobic007G050800 Sobic007G050800 Sobic001G460100--Sobic007G050800 Sobic006G275500 Sobic006G275500 Sobic001G460100--Sobic006G275500 Sobic003G102700 Sobic003G102700 Sobic001G460100--Sobic003G102700 Sobic010G177100--Sobic001G460100 Sobic003G259300 Sobic003G259300 Sobic010G177100--Sobic003G259300 Sobic010G079100 Sobic010G079100 Sobic010G177100--Sobic010G079100 Sobic010G177100--Sobic003G024000 Sobic005G157300 Sobic005G157300 Sobic010G177100--Sobic005G157300 Sobic001G425700 Sobic001G425700 Sobic010G177100--Sobic001G425700 Sobic010G177100--Sobic007G050800 Sobic003G412800 Sobic003G412800 Sobic010G177100--Sobic003G412800 Sobic009G225500 Sobic009G225500 Sobic010G177100--Sobic009G225500 Sobic002G168000 Sobic002G168000 Sobic009G188900--Sobic002G168000 Sobic010G250400 Sobic010G250400 Sobic009G188900--Sobic010G250400 Sobic006G281900 Sobic006G281900 Sobic009G188900--Sobic006G281900 Sobic001G199500 Sobic001G199500 Sobic009G188900--Sobic001G199500 Sobic009G188900--Sobic006G275500 Sobic009G188900--Sobic001G425700 Sobic001G290500 Sobic001G290500 Sobic009G188900--Sobic001G290500 Sobic005G153000 Sobic005G153000 Sobic009G188900--Sobic005G153000 Sobic007G187700 Sobic007G187700 Sobic009G188900--Sobic007G187700 Sobic005G068800 Sobic005G068800 Sobic009G113900--Sobic005G068800 Sobic009G113900--Sobic001G460100 Sobic009G113900--Sobic001G199500 Sobic001G507000 Sobic001G507000 Sobic009G113900--Sobic001G507000 Sobic005G088900 Sobic005G088900 Sobic009G113900--Sobic005G088900 Sobic002G215200 Sobic002G215200 Sobic009G113900--Sobic002G215200 Sobic009G113900--Sobic006G281900 Sobic006G051000 Sobic006G051000 Sobic009G113900--Sobic006G051000 Sobic001G122100 Sobic001G122100 Sobic009G113900--Sobic001G122100 Sobic001G104500 Sobic001G104500 Sobic003G084200--Sobic001G104500 Sobic003G084200--Sobic007G050800 Sobic003G084200--Sobic006G275500 Sobic003G084200--Sobic005G157300 Sobic003G084200--Sobic002G168000 Sobic003G084200--Sobic007G187700 Sobic003G244000 Sobic003G244000 Sobic003G084200--Sobic003G244000 Sobic009G002200 Sobic009G002200 Sobic003G084200--Sobic009G002200 Sobic001G456400 Sobic001G456400 Sobic003G084200--Sobic001G456400 Sobic009G012600--Sobic007G050800 Sobic005G045700 Sobic005G045700 Sobic009G012600--Sobic005G045700 Sobic006G226000 Sobic006G226000 Sobic009G012600--Sobic006G226000 Sobic007G192200 Sobic007G192200 Sobic009G012600--Sobic007G192200 Sobic009G012600--Sobic009G002200 Sobic005G036200 Sobic005G036200 Sobic009G012600--Sobic005G036200 Sobic010G037901 Sobic010G037901 Sobic009G012600--Sobic010G037901 Sobic006G262501 Sobic006G262501 Sobic009G012600--Sobic006G262501 Sobic008G191850 Sobic008G191850 Sobic009G012600--Sobic008G191850 Sobic003G024000--Sobic001G425700 Sobic003G024000--Sobic001G199500 Sobic003G024000--Sobic006G281900 Sobic003G226700 Sobic003G226700 Sobic003G024000--Sobic003G226700 Sobic001G054700 Sobic001G054700 Sobic003G024000--Sobic001G054700 Sobic003G420300 Sobic003G420300 Sobic003G024000--Sobic003G420300 Sobic006G084300 Sobic006G084300 Sobic003G024000--Sobic006G084300 Sobic008G083500 Sobic008G083500 Sobic003G024000--Sobic008G083500 Sobic003G292700 Sobic003G292700 Sobic003G024000--Sobic003G292700 Sobic007G050800--Sobic009G002200 Sobic006G016700 Sobic006G016700 Sobic007G050800--Sobic006G016700 Sobic008G118100 Sobic008G118100 Sobic007G050800--Sobic008G118100 Sobic007G050800--Sobic006G226000 Sobic007G050800--Sobic002G168000 Sobic007G050800--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic007G050800--Sobic006G135800 Sobic007G050800--Sobic007G187700 Sobic007G050800--Sobic009G012600 Sobic006G275500--Sobic006G016700 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic003G147500 Sobic003G147500 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic008G090000 Sobic008G090000 Sobic006G275500--Sobic008G090000 Sobic009G077300 Sobic009G077300 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic009G146250 Sobic009G146250 Sobic006G275500--Sobic009G146250 Sobic003G102700--Sobic001G199500 Sobic005G102800 Sobic005G102800 Sobic003G102700--Sobic005G102800 Sobic003G102700--Sobic006G084300 Sobic002G187600 Sobic002G187600 Sobic003G102700--Sobic002G187600 Sobic003G102700--Sobic002G168000 Sobic003G102700--Sobic006G281900 Sobic003G102700--Sobic003G024000 Sobic003G102700--Sobic009G188900 Sobic002G367200 Sobic002G367200 Sobic003G102700--Sobic002G367200
Octagon: transcription factors


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