Gene annotation
Transcriptome id Sobic.009G109300.1
Synonym POLA3, POLA4
Functional annotation POLA4 - Putative DNA polymerase alpha complex subunit, expressed
UniProt A0A1B6P8E2
Pfam PF01896
Panther DB PTHR10536
NCBI CDD KOG2851; Eukaryotic-type DNA primase, catalytic (small) subunit
KEGG Orthology K02684; DNA primase small subunit
Gene Ontology GO:0006269; DNA replication, synthesis of RNA primer GO:0003896DNA primase activity


Orthologs (automatic annotation)
TAIR AT5G41880 : DNA primases;DNA primases
RAP-DB (Rice) LOC_Os05g29010.2 : POLA4 - Putative DNA polymerase alpha complex subunit, expressed
MaizeGDB (Corn) Zm00025a036953
Brachypodium KQJ99380
Barley HORVU1Hr1G059180.12 , HORVU1Hr1G059180.13 , HORVU1Hr1G059180.10 , HORVU1Hr1G059180.11 , HORVU6Hr1G021590.3 , HORVU6Hr1G021590.2 , HORVU1Hr1G059180.1 , HORVU1Hr1G059180.2 , HORVU1Hr1G059180.3 , HORVU1Hr1G059180.4 , HORVU1Hr1G059180.5 , HORVU1Hr1G059180.6 , HORVU1Hr1G059180.7 , HORVU1Hr1G059180.8 , HORVU1Hr1G059180.9 , HORVU6Hr1G021590.1 , HORVU6Hr1G021590.4
Wheat TraesCS1B02G242000 , TraesCS1A02G227700 , TraesCS1D02G229400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G112100 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed K00208: enoyl-[acyl-carrier protein] reductase I
2 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
3 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
4 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
5 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
6 Sobic.002G230800 expressed protein -
7 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
8 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
9 Sobic.002G246900 expressed protein -
10 Sobic.001G169800 cyclin, putative, expressed K06627: cyclin-A
11 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
12 Sobic.006G094100 expressed protein -
13 Sobic.002G236700 TMV-MP30 binding protein 2C, putative, expressed -
14 Sobic.006G196600 expressed protein -
15 Sobic.010G191000 expressed protein -
16 Sobic.001G532800 RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
17 Sobic.002G303800 expressed protein -
18 Sobic.002G315400 expressed protein -
19 Sobic.007G218100 transmembrane receptor, putative, expressed -
20 Sobic.006G116500 expressed protein -


Gene co-expression network
sample Sobic009G109300 Sobic009G109300 Sobic007G112100 Sobic007G112100 Sobic009G109300--Sobic007G112100 Sobic006G051000 Sobic006G051000 Sobic009G109300--Sobic006G051000 Sobic010G103700 Sobic010G103700 Sobic009G109300--Sobic010G103700 Sobic006G195500 Sobic006G195500 Sobic009G109300--Sobic006G195500 Sobic001G238900 Sobic001G238900 Sobic009G109300--Sobic001G238900 Sobic002G230800 Sobic002G230800 Sobic009G109300--Sobic002G230800 Sobic003G183700 Sobic003G183700 Sobic009G109300--Sobic003G183700 Sobic003G179500 Sobic003G179500 Sobic009G109300--Sobic003G179500 Sobic002G246900 Sobic002G246900 Sobic009G109300--Sobic002G246900 Sobic007G112100--Sobic009G109300 Sobic001G532800 Sobic001G532800 Sobic007G112100--Sobic001G532800 Sobic004G032900 Sobic004G032900 Sobic007G112100--Sobic004G032900 Sobic002G158500 Sobic002G158500 Sobic007G112100--Sobic002G158500 Sobic002G236700 Sobic002G236700 Sobic007G112100--Sobic002G236700 Sobic006G120600 Sobic006G120600 Sobic007G112100--Sobic006G120600 Sobic001G140700 Sobic001G140700 Sobic007G112100--Sobic001G140700 Sobic002G304400 Sobic002G304400 Sobic007G112100--Sobic002G304400 Sobic007G079600 Sobic007G079600 Sobic007G112100--Sobic007G079600 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G196600 Sobic006G196600 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic009G087000 Sobic009G087000 Sobic006G051000--Sobic009G087000 Sobic006G051000--Sobic009G109300 Sobic008G129200 Sobic008G129200 Sobic006G051000--Sobic008G129200 Sobic005G110535 Sobic005G110535 Sobic006G051000--Sobic005G110535 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic010G103700--Sobic006G120600 Sobic010G103700--Sobic006G195500 Sobic010G103700--Sobic006G051000 Sobic010G103700--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic010G103700--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic010G103700--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic010G103700--Sobic004G355500 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic001G377700 Sobic001G377700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G195500--Sobic006G120600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic003G244000 Sobic003G244000 Sobic001G238900--Sobic003G244000 Sobic001G238900--Sobic002G230800 Sobic001G105800 Sobic001G105800 Sobic001G238900--Sobic001G105800 Sobic001G238900--Sobic002G246900 Sobic002G223900 Sobic002G223900 Sobic001G238900--Sobic002G223900 Sobic001G238900--Sobic009G109300 Sobic004G317000 Sobic004G317000 Sobic001G238900--Sobic004G317000 Sobic001G118800 Sobic001G118800 Sobic001G238900--Sobic001G118800 Sobic001G169800 Sobic001G169800 Sobic001G238900--Sobic001G169800 Sobic002G230800--Sobic001G238900 Sobic010G105400 Sobic010G105400 Sobic002G230800--Sobic010G105400 Sobic006G124400 Sobic006G124400 Sobic002G230800--Sobic006G124400 Sobic001G054700 Sobic001G054700 Sobic002G230800--Sobic001G054700 Sobic002G230800--Sobic003G179500 Sobic002G230800--Sobic009G109300 Sobic007G218100 Sobic007G218100 Sobic002G230800--Sobic007G218100 Sobic002G230800--Sobic002G246900 Sobic002G230800--Sobic003G244000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic002G246900--Sobic004G047100 Sobic002G246900--Sobic010G105400 Sobic010G191000 Sobic010G191000 Sobic002G246900--Sobic010G191000 Sobic003G107200 Sobic003G107200 Sobic002G246900--Sobic003G107200 Sobic002G246900--Sobic001G238900 Sobic009G181500 Sobic009G181500 Sobic002G246900--Sobic009G181500 Sobic002G246900--Sobic002G236700 Sobic002G246900--Sobic001G169800 Sobic002G246900--Sobic002G230800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.