Gene annotation
| Transcriptome id | Sobic.006G195500.1 |
|---|---|
| Synonym | Sb06g026800, emb2411 |
| Functional annotation | DNA-binding protein, putative, expressed |
| UniProt | A0A1B6PMW5 |
| Pfam | PF12705 PF13086 |
| Panther DB | PTHR10887 PTHR10887:SF14 |
| NCBI CDD | - |
| KEGG Orthology | K10742; DNA replication ATP-dependent helicase Dna2 |
| Gene Ontology | GO:0043142; single-stranded DNA helicase activity GO:00171085'-flap endonuclease activity |
Orthologs (automatic annotation)
| TAIR | AT1G08840 : DNA replication helicase, putative |
|---|---|
| RAP-DB (Rice) | LOC_Os04g49860.1 : DNA2 - Putative DNA replication helicase 2 protein, expressed |
| MaizeGDB (Corn) | Zm00025a010017 |
| Brachypodium | KQJ84273 , PNT61727 |
| Barley | HORVU2Hr1G105420.26 , HORVU2Hr1G105420.20 , HORVU2Hr1G105420.14 , HORVU2Hr1G105420.15 , HORVU2Hr1G105420.16 , HORVU2Hr1G105420.17 , HORVU2Hr1G105420.10 , HORVU2Hr1G105420.11 , HORVU2Hr1G105420.12 , HORVU2Hr1G105420.13 , HORVU2Hr1G105420.18 , HORVU2Hr1G105420.19 , HORVU2Hr1G105420.2 , HORVU2Hr1G105420.3 , HORVU2Hr1G105420.29 , HORVU2Hr1G105420.28 , HORVU2Hr1G105420.21 , HORVU2Hr1G105420.23 , HORVU2Hr1G105420.22 , HORVU2Hr1G105420.25 , HORVU2Hr1G105420.24 , HORVU2Hr1G105420.27 , HORVU2Hr1G105420.4 , HORVU2Hr1G105420.5 , HORVU2Hr1G105420.1 , HORVU2Hr1G105420.30 , HORVU2Hr1G105420.31 |
| Wheat | TraesCS2B02G473200 , TraesCS2D02G451700 , TraesCS2A02G451900 , TraesCS2A02G451900 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G051000 | POLA3 - Putative DNA polymerase alpha complex subunit, expressed | K02685: DNA primase large subunit |
| 2 | Sobic.003G183700 | MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed | K02212: MCM4, DNA replication licensing factor MCM4 |
| 3 | Sobic.010G103700 | POLA2 - Putative DNA polymerase alpha complex subunit, expressed | K02321: DNA polymerase alpha subunit B |
| 4 | Sobic.001G377700 | expressed protein | K10895: fanconi anemia group I protein |
| 5 | Sobic.009G087000 | MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed | K02542: DNA replication licensing factor MCM6 |
| 6 | Sobic.006G120600 | AAA-type ATPase family protein, putative, expressed | - |
| 7 | Sobic.006G196600 | expressed protein | - |
| 8 | Sobic.005G110535 | - | K02540: DNA replication licensing factor MCM2 |
| 9 | Sobic.003G179500 | expressed protein | K06676: BRRN1, BRN1, condensin complex subunit 2 |
| 10 | Sobic.002G290000 | helicase, putative, expressed | K15362: BRIP1, BACH1, fanconi anemia group J protein |
| 11 | Sobic.009G146250 | - | - |
| 12 | Sobic.008G129200 | MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed | K02210: MCM7, DNA replication licensing factor MCM7 |
| 13 | Sobic.009G109300 | POLA4 - Putative DNA polymerase alpha complex subunit, expressed | K02684: DNA primase small subunit |
| 14 | Sobic.004G321400 | BRUSHY 1, putative, expressed | - |
| 15 | Sobic.004G270800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed | K03363: cell division cycle 20, cofactor of APC complex |
| 16 | Sobic.004G156200 | POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed | K02324: DNA polymerase epsilon subunit 1 |
| 17 | Sobic.010G147700 | WD domain, G-beta repeat domain containing protein, expressed | K11274: WDHD1, chromosome transmission fidelity protein 4 |
| 18 | Sobic.005G068800 | TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed | K10728: topoisomerase (DNA) II binding protein 1 |
| 19 | Sobic.007G125300 | BRCA1 C Terminus domain containing protein, expressed | - |
| 20 | Sobic.007G187700 | retinoblastoma-related protein-like, putative, expressed | K04681: retinoblastoma-like protein 1 |
Gene co-expression network
Octagon: transcription factors
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