Gene annotation
Transcriptome id Sobic.004G156200.1
Synonym EMB142, POL2A, Sb04g020730, ESD7, ABO4, EMB2284, TIL1, EMB529
Functional annotation POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed
UniProt A0A1Z5RNG0
Pfam PF00136 PF03104 PF08490
Panther DB PTHR10670
NCBI CDD -
KEGG Orthology K02324; DNA polymerase epsilon subunit 1
Gene Ontology GO:0003677; DNA binding GO:0000166nucleotide binding GO:00084083'-5' exonuclease activity GO:0008270zinc ion binding GO:0006260DNA replication GO:0005634nucleus GO:0003887DNA-directed DNA polymerase activity


Orthologs (automatic annotation)
TAIR AT1G08260 : DNA polymerase epsilon catalytic subunit
RAP-DB (Rice) LOC_Os02g30800.1 : POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed
MaizeGDB (Corn) Zm00025a030840 , Zm00025a020410 , Zm00025a033587 , Zm00025a058118
Brachypodium KQJ99601
Barley HORVU1Hr1G036500.79 , HORVU1Hr1G036500.78 , HORVU1Hr1G036500.71 , HORVU1Hr1G036500.70 , HORVU1Hr1G036500.73 , HORVU1Hr1G036500.72 , HORVU1Hr1G036500.75 , HORVU1Hr1G036500.74 , HORVU1Hr1G036500.77 , HORVU1Hr1G036500.76 , HORVU1Hr1G036500.9 , HORVU1Hr1G036500.8 , HORVU1Hr1G036500.3 , HORVU1Hr1G036500.2 , HORVU1Hr1G036500.1 , HORVU1Hr1G036500.7 , HORVU1Hr1G036500.6 , HORVU1Hr1G036500.5 , HORVU1Hr1G036500.4 , HORVU1Hr1G036500.19 , HORVU1Hr1G036500.18 , HORVU1Hr1G036500.13 , HORVU1Hr1G036500.12 , HORVU1Hr1G036500.11 , HORVU1Hr1G036500.10 , HORVU1Hr1G036500.17 , HORVU1Hr1G036500.16 , HORVU1Hr1G036500.15 , HORVU1Hr1G036500.14 , HORVU1Hr1G036500.68 , HORVU1Hr1G036500.69 , HORVU1Hr1G036500.66 , HORVU1Hr1G036500.67 , HORVU1Hr1G036500.64 , HORVU1Hr1G036500.65 , HORVU1Hr1G036500.62 , HORVU1Hr1G036500.63 , HORVU1Hr1G036500.60 , HORVU1Hr1G036500.61 , HORVU1Hr1G036500.39 , HORVU1Hr1G036500.38 , HORVU1Hr1G036500.35 , HORVU1Hr1G036500.34 , HORVU1Hr1G036500.37 , HORVU1Hr1G036500.36 , HORVU1Hr1G036500.31 , HORVU1Hr1G036500.30 , HORVU1Hr1G036500.33 , HORVU1Hr1G036500.32 , HORVU1Hr1G036500.22 , HORVU1Hr1G036500.23 , HORVU1Hr1G036500.20 , HORVU1Hr1G036500.21 , HORVU1Hr1G036500.26 , HORVU1Hr1G036500.27 , HORVU1Hr1G036500.24 , HORVU1Hr1G036500.25 , HORVU1Hr1G036500.28 , HORVU1Hr1G036500.29 , HORVU1Hr1G036500.57 , HORVU1Hr1G036500.56 , HORVU1Hr1G036500.55 , HORVU1Hr1G036500.54 , HORVU1Hr1G036500.53 , HORVU1Hr1G036500.52 , HORVU1Hr1G036500.51 , HORVU1Hr1G036500.50 , HORVU1Hr1G036500.59 , HORVU1Hr1G036500.58 , HORVU1Hr1G036500.44 , HORVU1Hr1G036500.45 , HORVU1Hr1G036500.46 , HORVU1Hr1G036500.47 , HORVU1Hr1G036500.40 , HORVU1Hr1G036500.41 , HORVU1Hr1G036500.42 , HORVU1Hr1G036500.43 , HORVU1Hr1G036500.48 , HORVU1Hr1G036500.49
Wheat TraesCS1A02G130700 , TraesCS1B02G156600 , TraesCS1D02G139000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
2 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
3 Sobic.003G423600 expressed protein K06228: fused
4 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
5 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
6 Sobic.006G281400 expressed protein -
7 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
8 Sobic.009G146250 - -
9 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
10 Sobic.004G095200 Peptidase family C50, putative, expressed K02365: separase
11 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
12 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
13 Sobic.002G296000 HEAT repeat family protein, putative, expressed -
14 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
15 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
16 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
17 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
18 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
19 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
20 Sobic.003G118100 EMB3013, putative, expressed K17545: serine/threonine-protein kinase ULK4


Gene co-expression network
sample Sobic004G156200 Sobic004G156200 Sobic005G110535 Sobic005G110535 Sobic004G156200--Sobic005G110535 Sobic005G068800 Sobic005G068800 Sobic004G156200--Sobic005G068800 Sobic003G423600 Sobic003G423600 Sobic004G156200--Sobic003G423600 Sobic002G290000 Sobic002G290000 Sobic004G156200--Sobic002G290000 Sobic009G087000 Sobic009G087000 Sobic004G156200--Sobic009G087000 Sobic006G281400 Sobic006G281400 Sobic004G156200--Sobic006G281400 Sobic003G369200 Sobic003G369200 Sobic004G156200--Sobic003G369200 Sobic009G146250 Sobic009G146250 Sobic004G156200--Sobic009G146250 Sobic009G052100 Sobic009G052100 Sobic004G156200--Sobic009G052100 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic005G110535--Sobic010G147700 Sobic008G129200 Sobic008G129200 Sobic005G110535--Sobic008G129200 Sobic003G183700 Sobic003G183700 Sobic005G110535--Sobic003G183700 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic001G377700 Sobic001G377700 Sobic005G110535--Sobic001G377700 Sobic001G507000 Sobic001G507000 Sobic005G068800--Sobic001G507000 Sobic005G068800--Sobic004G156200 Sobic004G095200 Sobic004G095200 Sobic005G068800--Sobic004G095200 Sobic006G120600 Sobic006G120600 Sobic005G068800--Sobic006G120600 Sobic005G068800--Sobic009G146250 Sobic006G195500 Sobic006G195500 Sobic005G068800--Sobic006G195500 Sobic005G068800--Sobic003G183700 Sobic002G021200 Sobic002G021200 Sobic005G068800--Sobic002G021200 Sobic005G068800--Sobic009G052100 Sobic003G423600--Sobic006G281400 Sobic008G148000 Sobic008G148000 Sobic003G423600--Sobic008G148000 Sobic005G000500 Sobic005G000500 Sobic003G423600--Sobic005G000500 Sobic003G423600--Sobic004G156200 Sobic002G204400 Sobic002G204400 Sobic003G423600--Sobic002G204400 Sobic002G296000 Sobic002G296000 Sobic003G423600--Sobic002G296000 Sobic003G423600--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic003G423600--Sobic007G168900 Sobic003G423600--Sobic005G110535 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic007G125300 Sobic007G125300 Sobic002G290000--Sobic007G125300 Sobic002G290000--Sobic009G087000 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic002G290000--Sobic002G113400 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic006G281400--Sobic002G204400 Sobic006G281400--Sobic003G423600 Sobic006G281400--Sobic008G148000 Sobic006G281400--Sobic005G000500 Sobic001G398400 Sobic001G398400 Sobic006G281400--Sobic001G398400 Sobic010G105400 Sobic010G105400 Sobic006G281400--Sobic010G105400 Sobic006G281400--Sobic003G369200 Sobic006G281400--Sobic005G110535 Sobic006G281400--Sobic004G156200 Sobic003G369200--Sobic010G147700 Sobic003G369200--Sobic005G110535 Sobic003G369200--Sobic009G087000 Sobic003G201000 Sobic003G201000 Sobic003G369200--Sobic003G201000 Sobic003G393100 Sobic003G393100 Sobic003G369200--Sobic003G393100 Sobic009G184200 Sobic009G184200 Sobic003G369200--Sobic009G184200 Sobic003G369200--Sobic003G183700 Sobic003G369200--Sobic006G029300 Sobic003G369200--Sobic007G168900 Sobic009G146250--Sobic004G156200 Sobic009G146250--Sobic006G195500 Sobic009G146250--Sobic002G021200 Sobic006G275500 Sobic006G275500 Sobic009G146250--Sobic006G275500 Sobic009G146250--Sobic006G120600 Sobic007G187700 Sobic007G187700 Sobic009G146250--Sobic007G187700 Sobic001G304800 Sobic001G304800 Sobic009G146250--Sobic001G304800 Sobic009G146250--Sobic005G068800 Sobic009G146250--Sobic001G377700 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic009G052100--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic006G071628 Sobic006G071628 Sobic009G052100--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic009G052100--Sobic010G250800 Sobic003G315700 Sobic003G315700 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300
Octagon: transcription factors


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