Gene annotation
Transcriptome id Sobic.006G120600.1
Synonym Sb06g020120
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1B6PLN1
Pfam PF13191
Panther DB PTHR23077
NCBI CDD KOG0744; AAA+-type ATPase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24710 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g40290.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056305
Brachypodium KQJ83174 , KQJ83163
Barley HORVU2Hr1G082720.19 , HORVU2Hr1G082720.18 , HORVU2Hr1G082720.17 , HORVU2Hr1G082720.16 , HORVU2Hr1G082720.15 , HORVU2Hr1G082720.14 , HORVU2Hr1G082720.13 , HORVU2Hr1G082720.12 , HORVU2Hr1G082720.11 , HORVU2Hr1G082720.10 , HORVU2Hr1G082720.6 , HORVU2Hr1G082720.5 , HORVU2Hr1G082720.4 , HORVU2Hr1G082720.3 , HORVU2Hr1G082720.2 , HORVU2Hr1G082720.1 , HORVU2Hr1G082720.9 , HORVU2Hr1G082720.22 , HORVU2Hr1G082720.20 , HORVU2Hr1G082720.21 , HORVU2Hr1G082720.7 , HORVU2Hr1G082720.8
Wheat TraesCS2A02G325700 , TraesCS2B02G356200 , TraesCS2D02G337000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
2 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
3 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
4 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
5 Sobic.002G303800 expressed protein -
6 Sobic.003G179500 expressed protein K06676: BRRN1, BRN1, condensin complex subunit 2
7 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
8 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
9 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
10 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
11 Sobic.009G146250 - -
12 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
13 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
14 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
15 Sobic.010G067800 integral membrane transporter family protein, putative, expressed -
16 Sobic.004G321400 BRUSHY 1, putative, expressed -
17 Sobic.009G109300 POLA4 - Putative DNA polymerase alpha complex subunit, expressed K02684: DNA primase small subunit
18 Sobic.001G507000 expressed protein -
19 Sobic.004G270800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WD repeat-containing protein, putative, expressed K03363: cell division cycle 20, cofactor of APC complex
20 Sobic.002G218600 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -


Gene co-expression network
sample Sobic006G120600 Sobic006G120600 Sobic010G103700 Sobic010G103700 Sobic006G120600--Sobic010G103700 Sobic003G183700 Sobic003G183700 Sobic006G120600--Sobic003G183700 Sobic006G195500 Sobic006G195500 Sobic006G120600--Sobic006G195500 Sobic002G290000 Sobic002G290000 Sobic006G120600--Sobic002G290000 Sobic002G303800 Sobic002G303800 Sobic006G120600--Sobic002G303800 Sobic003G179500 Sobic003G179500 Sobic006G120600--Sobic003G179500 Sobic007G125300 Sobic007G125300 Sobic006G120600--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic006G120600--Sobic009G087000 Sobic006G051000 Sobic006G051000 Sobic006G120600--Sobic006G051000 Sobic010G103700--Sobic003G183700 Sobic010G103700--Sobic003G179500 Sobic010G103700--Sobic006G120600 Sobic010G103700--Sobic006G195500 Sobic010G103700--Sobic006G051000 Sobic010G103700--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic010G103700--Sobic010G147700 Sobic006G116500 Sobic006G116500 Sobic010G103700--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic010G103700--Sobic004G355500 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic005G110535 Sobic005G110535 Sobic003G183700--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic001G377700 Sobic001G377700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G195500--Sobic006G120600 Sobic006G196600 Sobic006G196600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic002G290000--Sobic009G087000 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic002G290000--Sobic002G113400 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic003G444300 Sobic003G444300 Sobic002G303800--Sobic003G444300 Sobic002G303800--Sobic006G120600 Sobic001G169800 Sobic001G169800 Sobic002G303800--Sobic001G169800 Sobic002G303800--Sobic003G183700 Sobic002G303800--Sobic010G103700 Sobic001G146900 Sobic001G146900 Sobic002G303800--Sobic001G146900 Sobic002G303800--Sobic003G179500 Sobic002G303800--Sobic006G051000 Sobic001G083300 Sobic001G083300 Sobic002G303800--Sobic001G083300 Sobic003G179500--Sobic003G183700 Sobic003G179500--Sobic010G103700 Sobic010G105400 Sobic010G105400 Sobic003G179500--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic003G179500--Sobic005G144600 Sobic003G179500--Sobic010G147700 Sobic003G179500--Sobic009G087000 Sobic003G179500--Sobic005G110535 Sobic003G179500--Sobic006G116500 Sobic004G047100 Sobic004G047100 Sobic003G179500--Sobic004G047100 Sobic007G125300--Sobic002G290000 Sobic007G125300--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic007G125300--Sobic008G148000 Sobic007G125300--Sobic004G053900 Sobic001G109700 Sobic001G109700 Sobic007G125300--Sobic001G109700 Sobic007G125300--Sobic001G377700 Sobic002G204400 Sobic002G204400 Sobic007G125300--Sobic002G204400 Sobic003G118100 Sobic003G118100 Sobic007G125300--Sobic003G118100 Sobic007G125300--Sobic002G113400 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic003G369200 Sobic003G369200 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic006G051000--Sobic003G183700 Sobic006G051000--Sobic006G195500 Sobic006G051000--Sobic010G103700 Sobic006G051000--Sobic006G196600 Sobic006G051000--Sobic003G179500 Sobic006G051000--Sobic009G087000 Sobic009G109300 Sobic009G109300 Sobic006G051000--Sobic009G109300 Sobic006G051000--Sobic008G129200 Sobic006G051000--Sobic005G110535
Octagon: transcription factors


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