Gene annotation
Transcriptome id Sobic.001G377700.1
Synonym Sb01g035850
Functional annotation expressed protein
UniProt C5X0Q4
Pfam PF14675 PF14679 PF14676 PF14680 PF14678
Panther DB PTHR21818 PTHR21818:SF0
NCBI CDD KOG4553; Uncharacterized conserved protein
KEGG Orthology K10895; fanconi anemia group I protein
Gene Ontology GO:0006281; DNA repair


Orthologs (automatic annotation)
TAIR AT5G49110 : -
RAP-DB (Rice) LOC_Os03g22190.1 : expressed protein
MaizeGDB (Corn) Zm00025a051768 , Zm00025a053036 , Zm00025a050866 , Zm00025a002388
Brachypodium -
Barley HORVU4Hr1G048140.24 , HORVU4Hr1G048140.22 , HORVU4Hr1G048140.23 , HORVU4Hr1G048140.20 , HORVU4Hr1G048140.21 , HORVU4Hr1G048140.7 , HORVU4Hr1G048140.6 , HORVU4Hr1G048140.5 , HORVU4Hr1G048140.4 , HORVU4Hr1G048140.3 , HORVU4Hr1G048140.2 , HORVU4Hr1G048140.1 , HORVU4Hr1G048140.8 , HORVU4Hr1G048140.9 , HORVU4Hr1G048140.19 , HORVU4Hr1G048140.18 , HORVU4Hr1G048140.17 , HORVU4Hr1G048140.16 , HORVU4Hr1G048140.15 , HORVU4Hr1G048140.14 , HORVU4Hr1G048140.13 , HORVU4Hr1G048140.12 , HORVU4Hr1G048140.11 , HORVU4Hr1G048140.10
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
2 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
3 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
4 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
5 Sobic.003G055600 expressed protein -
6 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
7 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
8 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
9 Sobic.005G157300 protein binding protein, putative, expressed -
10 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
11 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
12 Sobic.006G196600 expressed protein -
13 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
14 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
15 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
16 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
17 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
18 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
19 Sobic.007G188001 - K11844: ubiquitin carboxyl-terminal hydrolase 16/45
20 Sobic.001G295400 protein kinase domain containing protein, expressed K02214: cell division control protein 7


Gene co-expression network
sample Sobic001G377700 Sobic001G377700 Sobic002G290000 Sobic002G290000 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic003G183700 Sobic003G183700 Sobic001G377700--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic001G377700--Sobic005G110535 Sobic003G055600 Sobic003G055600 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic007G187700 Sobic007G187700 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic005G157300 Sobic005G157300 Sobic001G377700--Sobic005G157300 Sobic002G290000--Sobic005G110535 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic002G290000--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic002G290000--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic002G021200--Sobic007G187700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic002G021200--Sobic003G055600 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic006G051000 Sobic006G051000 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic010G103700 Sobic010G103700 Sobic003G183700--Sobic010G103700 Sobic003G179500 Sobic003G179500 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic003G183700--Sobic008G129200 Sobic004G321400 Sobic004G321400 Sobic003G183700--Sobic004G321400 Sobic003G183700--Sobic010G147700 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic003G055600--Sobic001G377700 Sobic003G055600--Sobic005G157300 Sobic009G143200 Sobic009G143200 Sobic003G055600--Sobic009G143200 Sobic003G055600--Sobic003G183700 Sobic003G055600--Sobic004G321400 Sobic009G172950 Sobic009G172950 Sobic003G055600--Sobic009G172950 Sobic003G055600--Sobic002G021200 Sobic003G055600--Sobic005G110535 Sobic007G007800 Sobic007G007800 Sobic003G055600--Sobic007G007800 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G120600 Sobic006G120600 Sobic006G195500--Sobic006G120600 Sobic006G196600 Sobic006G196600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic005G153000 Sobic005G153000 Sobic007G187700--Sobic005G153000 Sobic001G104500 Sobic001G104500 Sobic007G187700--Sobic001G104500 Sobic007G187700--Sobic001G377700 Sobic006G275500 Sobic006G275500 Sobic007G187700--Sobic006G275500 Sobic004G317000 Sobic004G317000 Sobic007G187700--Sobic004G317000 Sobic004G282601 Sobic004G282601 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic007G125300--Sobic002G290000 Sobic007G125300--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic007G125300--Sobic008G148000 Sobic007G125300--Sobic004G053900 Sobic001G109700 Sobic001G109700 Sobic007G125300--Sobic001G109700 Sobic007G125300--Sobic001G377700 Sobic002G204400 Sobic002G204400 Sobic007G125300--Sobic002G204400 Sobic003G118100 Sobic003G118100 Sobic007G125300--Sobic003G118100 Sobic007G125300--Sobic002G113400 Sobic005G157300--Sobic009G143200 Sobic005G157300--Sobic003G055600 Sobic005G157300--Sobic003G183700 Sobic005G157300--Sobic001G377700 Sobic005G157300--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic005G157300--Sobic006G221300 Sobic005G157300--Sobic007G187700 Sobic005G157300--Sobic009G172950 Sobic009G127800 Sobic009G127800 Sobic005G157300--Sobic009G127800
Octagon: transcription factors


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