Gene annotation
Transcriptome id Sobic.002G290000.2,Sobic.002G290000.3,Sobic.002G290000.1,Sobic.002G290000.4
Synonym Sb02g032150
Functional annotation helicase, putative, expressed
UniProt A0A1W0W690 , A0A1W0W6B2 , A0A1W0W680 , C5X7M9
Pfam PF06733 PF13307
Panther DB PTHR11472 PTHR11472:SF6
NCBI CDD -
KEGG Orthology K15362; BRIP1, BACH1, fanconi anemia group J protein
Gene Ontology GO:0005524; ATP binding GO:0004003DNA helicase activity GO:0003677DNA binding GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides GO:0008026helicase activity GO:0006139nucleobase-containing compound metabolic process GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G20720 : RAD3-like DNA-binding helicase protein
RAP-DB (Rice) LOC_Os09g37920.1 : helicase, putative, expressed
MaizeGDB (Corn) Zm00025a047958
Brachypodium -
Barley HORVU5Hr1G087670.19 , HORVU5Hr1G087670.18 , HORVU5Hr1G087670.15 , HORVU5Hr1G087670.17 , HORVU5Hr1G087670.16 , HORVU5Hr1G087670.11 , HORVU5Hr1G087670.12 , HORVU5Hr1G087670.6 , HORVU5Hr1G087670.27 , HORVU5Hr1G087670.24 , HORVU5Hr1G087670.26 , HORVU5Hr1G087670.32 , HORVU5Hr1G087670.31 , HORVU5Hr1G087670.30 , HORVU5Hr1G087670.8 , HORVU5Hr1G087670.28 , HORVU5Hr1G087670.29 , HORVU5Hr1G087670.23 , HORVU5Hr1G087670.25 , HORVU5Hr1G087670.9 , HORVU5Hr1G087670.1 , HORVU5Hr1G087670.3 , HORVU5Hr1G087670.2 , HORVU5Hr1G087670.5 , HORVU5Hr1G087670.4 , HORVU5Hr1G087670.7
Wheat TraesCS5B02G354900 , TraesCS5A02G352700 , TraesCS5D02G359700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
2 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
3 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
4 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
5 Sobic.010G147700 WD domain, G-beta repeat domain containing protein, expressed K11274: WDHD1, chromosome transmission fidelity protein 4
6 Sobic.001G013400 nuf2 family protein, expressed -
7 Sobic.002G113400 dnaJ domain containing protein, expressed -
8 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
9 Sobic.004G053900 expressed protein -
10 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
11 Sobic.004G321400 BRUSHY 1, putative, expressed -
12 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
13 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
14 Sobic.003G369200 POLA1 - Putative DNA polymerase alpha catalytic subunit, expressed K02320: DNA polymerase alpha subunit A
15 Sobic.001G025900 expressed protein -
16 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
17 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
18 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
19 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
20 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2


Gene co-expression network
sample Sobic002G290000 Sobic002G290000 Sobic005G110535 Sobic005G110535 Sobic002G290000--Sobic005G110535 Sobic001G377700 Sobic001G377700 Sobic002G290000--Sobic001G377700 Sobic007G125300 Sobic007G125300 Sobic002G290000--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic002G290000--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic002G290000--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic003G183700 Sobic003G183700 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic004G321400 Sobic004G321400 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic001G377700--Sobic002G290000 Sobic002G021200 Sobic002G021200 Sobic001G377700--Sobic002G021200 Sobic001G377700--Sobic003G183700 Sobic001G377700--Sobic005G110535 Sobic003G055600 Sobic003G055600 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic007G187700 Sobic007G187700 Sobic001G377700--Sobic007G187700 Sobic001G377700--Sobic007G125300 Sobic005G157300 Sobic005G157300 Sobic001G377700--Sobic005G157300 Sobic007G125300--Sobic002G290000 Sobic007G125300--Sobic005G110535 Sobic008G148000 Sobic008G148000 Sobic007G125300--Sobic008G148000 Sobic007G125300--Sobic004G053900 Sobic001G109700 Sobic001G109700 Sobic007G125300--Sobic001G109700 Sobic007G125300--Sobic001G377700 Sobic002G204400 Sobic002G204400 Sobic007G125300--Sobic002G204400 Sobic003G118100 Sobic003G118100 Sobic007G125300--Sobic003G118100 Sobic007G125300--Sobic002G113400 Sobic009G087000--Sobic010G147700 Sobic009G087000--Sobic003G183700 Sobic009G087000--Sobic005G110535 Sobic009G087000--Sobic008G129200 Sobic006G029300 Sobic006G029300 Sobic009G087000--Sobic006G029300 Sobic009G087000--Sobic003G369200 Sobic009G087000--Sobic004G321400 Sobic004G331600 Sobic004G331600 Sobic009G087000--Sobic004G331600 Sobic009G087000--Sobic003G179500 Sobic010G147700--Sobic006G029300 Sobic010G147700--Sobic009G087000 Sobic010G147700--Sobic005G110535 Sobic010G147700--Sobic003G369200 Sobic007G168900 Sobic007G168900 Sobic010G147700--Sobic007G168900 Sobic010G147700--Sobic008G129200 Sobic005G144600 Sobic005G144600 Sobic010G147700--Sobic005G144600 Sobic010G147700--Sobic003G183700 Sobic003G201000 Sobic003G201000 Sobic010G147700--Sobic003G201000 Sobic001G025900 Sobic001G025900 Sobic001G013400--Sobic001G025900 Sobic007G007800 Sobic007G007800 Sobic001G013400--Sobic007G007800 Sobic001G013400--Sobic002G290000 Sobic001G013400--Sobic002G113400 Sobic001G013400--Sobic008G129200 Sobic001G142000 Sobic001G142000 Sobic001G013400--Sobic001G142000 Sobic001G013400--Sobic005G110535 Sobic001G083300 Sobic001G083300 Sobic001G013400--Sobic001G083300 Sobic001G013400--Sobic004G331600 Sobic002G113400--Sobic004G053900 Sobic002G113400--Sobic001G025900 Sobic002G297500 Sobic002G297500 Sobic002G113400--Sobic002G297500 Sobic002G113400--Sobic002G290000 Sobic002G113400--Sobic001G013400 Sobic002G113400--Sobic008G148000 Sobic002G113400--Sobic005G110535 Sobic002G113400--Sobic007G125300 Sobic010G051100 Sobic010G051100 Sobic002G113400--Sobic010G051100 Sobic008G129200--Sobic004G331600 Sobic008G129200--Sobic009G087000 Sobic008G129200--Sobic005G110535 Sobic001G456500 Sobic001G456500 Sobic008G129200--Sobic001G456500 Sobic008G129200--Sobic010G147700 Sobic008G129200--Sobic003G183700 Sobic008G129200--Sobic001G083300 Sobic010G054600 Sobic010G054600 Sobic008G129200--Sobic010G054600 Sobic006G116500 Sobic006G116500 Sobic008G129200--Sobic006G116500 Sobic004G053900--Sobic002G113400 Sobic004G053900--Sobic002G297500 Sobic004G053900--Sobic002G290000 Sobic004G053900--Sobic007G125300 Sobic004G053900--Sobic008G148000 Sobic004G053900--Sobic005G110535 Sobic004G053900--Sobic010G051100 Sobic006G179200 Sobic006G179200 Sobic004G053900--Sobic006G179200 Sobic004G328300 Sobic004G328300 Sobic004G053900--Sobic004G328300
Octagon: transcription factors


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