Gene annotation
Transcriptome id Sobic.001G025900.1,Sobic.001G025900.2
Synonym Sb01g002470
Functional annotation expressed protein
UniProt A0A1B6QH16 , C5WU12
Pfam -
Panther DB PTHR36033 PTHR36033:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G17030 : Nucleic acid-binding proteins superfamily
RAP-DB (Rice) LOC_Os03g61700.1 : expressed protein
MaizeGDB (Corn) Zm00025a008908 , Zm00025a022463 , Zm00025a006403
Brachypodium PNT73850
Barley HORVU5Hr1G116720.9 , HORVU5Hr1G116720.2 , HORVU5Hr1G116720.3 , HORVU5Hr1G116720.1 , HORVU5Hr1G116720.4 , HORVU5Hr1G116720.5 , HORVU5Hr1G116720.18 , HORVU5Hr1G116720.12 , HORVU5Hr1G116720.14 , HORVU5Hr1G116720.16 , HORVU5Hr1G116720.17 , HORVU5Hr1G116720.25 , HORVU5Hr1G116720.24 , HORVU5Hr1G116720.21 , HORVU5Hr1G116720.23 , HORVU5Hr1G116720.22 , HORVU4Hr1G020140.1 , HORVU5Hr1G116720.15
Wheat TraesCS5D02G510200 , TraesCS5D02G510200 , TraesCS5B02G510100 , TraesCS5B02G510100 , TraesCS4A02G363300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G013400 nuf2 family protein, expressed -
2 Sobic.002G113400 dnaJ domain containing protein, expressed -
3 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
4 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
5 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
6 Sobic.004G321400 BRUSHY 1, putative, expressed -
7 Sobic.004G053900 expressed protein -
8 Sobic.004G328300 expressed protein -
9 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
10 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
11 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
12 Sobic.001G521100 POLD2 - Putative DNA polymerase delta complex subunit, expressed K02328: DNA polymerase delta subunit 2
13 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
14 Sobic.002G297500 coiled-coil domain-containing protein 111, putative, expressed -
15 Sobic.004G095200 Peptidase family C50, putative, expressed K02365: separase
16 Sobic.003G393100 chromosome segregation protein, putative, expressed K06674: structural maintenance of chromosome 2
17 Sobic.001G146900 expressed protein -
18 Sobic.010G051100 OsPDIL1-5 protein disulfide isomerase PDIL1-5, expressed K09580: PDIA1, protein disulfide-isomerase A1
19 Sobic.009G087000 MCM6 - Putative minichromosome maintenance MCM complex subunit 6, expressed K02542: DNA replication licensing factor MCM6
20 Sobic.007G184100 expressed protein -


Gene co-expression network
sample Sobic001G025900 Sobic001G025900 Sobic001G013400 Sobic001G013400 Sobic001G025900--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic001G025900--Sobic002G113400 Sobic002G290000 Sobic002G290000 Sobic001G025900--Sobic002G290000 Sobic002G271400 Sobic002G271400 Sobic001G025900--Sobic002G271400 Sobic005G110535 Sobic005G110535 Sobic001G025900--Sobic005G110535 Sobic004G321400 Sobic004G321400 Sobic001G025900--Sobic004G321400 Sobic004G053900 Sobic004G053900 Sobic001G025900--Sobic004G053900 Sobic004G328300 Sobic004G328300 Sobic001G025900--Sobic004G328300 Sobic006G236800 Sobic006G236800 Sobic001G025900--Sobic006G236800 Sobic001G013400--Sobic001G025900 Sobic007G007800 Sobic007G007800 Sobic001G013400--Sobic007G007800 Sobic001G013400--Sobic002G290000 Sobic001G013400--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic001G013400--Sobic008G129200 Sobic001G142000 Sobic001G142000 Sobic001G013400--Sobic001G142000 Sobic001G013400--Sobic005G110535 Sobic001G083300 Sobic001G083300 Sobic001G013400--Sobic001G083300 Sobic004G331600 Sobic004G331600 Sobic001G013400--Sobic004G331600 Sobic002G113400--Sobic004G053900 Sobic002G113400--Sobic001G025900 Sobic002G297500 Sobic002G297500 Sobic002G113400--Sobic002G297500 Sobic002G113400--Sobic002G290000 Sobic002G113400--Sobic001G013400 Sobic008G148000 Sobic008G148000 Sobic002G113400--Sobic008G148000 Sobic002G113400--Sobic005G110535 Sobic007G125300 Sobic007G125300 Sobic002G113400--Sobic007G125300 Sobic010G051100 Sobic010G051100 Sobic002G113400--Sobic010G051100 Sobic002G290000--Sobic005G110535 Sobic001G377700 Sobic001G377700 Sobic002G290000--Sobic001G377700 Sobic002G290000--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic002G290000--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic002G290000--Sobic010G147700 Sobic002G290000--Sobic001G013400 Sobic002G290000--Sobic002G113400 Sobic002G290000--Sobic008G129200 Sobic002G290000--Sobic004G053900 Sobic004G306100 Sobic004G306100 Sobic002G271400--Sobic004G306100 Sobic003G343200 Sobic003G343200 Sobic002G271400--Sobic003G343200 Sobic006G127200 Sobic006G127200 Sobic002G271400--Sobic006G127200 Sobic003G411700 Sobic003G411700 Sobic002G271400--Sobic003G411700 Sobic002G271400--Sobic001G025900 Sobic010G222800 Sobic010G222800 Sobic002G271400--Sobic010G222800 Sobic003G013800 Sobic003G013800 Sobic002G271400--Sobic003G013800 Sobic008G004900 Sobic008G004900 Sobic002G271400--Sobic008G004900 Sobic010G024000 Sobic010G024000 Sobic002G271400--Sobic010G024000 Sobic005G110535--Sobic002G290000 Sobic005G110535--Sobic009G087000 Sobic005G110535--Sobic010G147700 Sobic005G110535--Sobic008G129200 Sobic003G183700 Sobic003G183700 Sobic005G110535--Sobic003G183700 Sobic003G369200 Sobic003G369200 Sobic005G110535--Sobic003G369200 Sobic005G110535--Sobic004G321400 Sobic003G179500 Sobic003G179500 Sobic005G110535--Sobic003G179500 Sobic005G110535--Sobic001G377700 Sobic004G321400--Sobic003G183700 Sobic004G321400--Sobic009G087000 Sobic004G321400--Sobic005G110535 Sobic004G321400--Sobic002G290000 Sobic004G321400--Sobic003G369200 Sobic004G321400--Sobic008G129200 Sobic004G095200 Sobic004G095200 Sobic004G321400--Sobic004G095200 Sobic009G172950 Sobic009G172950 Sobic004G321400--Sobic009G172950 Sobic004G321400--Sobic004G331600 Sobic004G053900--Sobic002G113400 Sobic004G053900--Sobic002G297500 Sobic004G053900--Sobic002G290000 Sobic004G053900--Sobic007G125300 Sobic004G053900--Sobic008G148000 Sobic004G053900--Sobic005G110535 Sobic004G053900--Sobic010G051100 Sobic006G179200 Sobic006G179200 Sobic004G053900--Sobic006G179200 Sobic004G053900--Sobic004G328300 Sobic005G055600 Sobic005G055600 Sobic004G328300--Sobic005G055600 Sobic006G193100 Sobic006G193100 Sobic004G328300--Sobic006G193100 Sobic003G315700 Sobic003G315700 Sobic004G328300--Sobic003G315700 Sobic004G328300--Sobic004G053900 Sobic004G328300--Sobic001G025900 Sobic001G023500 Sobic001G023500 Sobic004G328300--Sobic001G023500 Sobic001G154300 Sobic001G154300 Sobic004G328300--Sobic001G154300 Sobic009G202801 Sobic009G202801 Sobic004G328300--Sobic009G202801 Sobic004G328300--Sobic002G113400 Sobic006G236800--Sobic001G025900 Sobic006G236800--Sobic004G328300 Sobic006G236800--Sobic002G113400 Sobic001G300400 Sobic001G300400 Sobic006G236800--Sobic001G300400 Sobic003G297200 Sobic003G297200 Sobic006G236800--Sobic003G297200 Sobic006G236800--Sobic002G271400 Sobic007G084200 Sobic007G084200 Sobic006G236800--Sobic007G084200 Sobic001G521100 Sobic001G521100 Sobic006G236800--Sobic001G521100 Sobic009G138300 Sobic009G138300 Sobic006G236800--Sobic009G138300
Octagon: transcription factors


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