Gene annotation
Transcriptome id Sobic.002G271400.1
Synonym
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QDQ3
Pfam PF00076
Panther DB PTHR10501 PTHR10501:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding GO:0017069snRNA binding GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT1G76940 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g43360.3 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014401
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G271400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G306100 expressed protein -
2 Sobic.003G343200 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
3 Sobic.006G127200 kelch repeat protein, putative, expressed -
4 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
5 Sobic.001G025900 expressed protein -
6 Sobic.010G222800 expressed protein -
7 Sobic.003G013800 expressed protein -
8 Sobic.008G004900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
9 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
10 Sobic.010G103500 ATMAP70 protein, putative, expressed -
11 Sobic.010G257500 expressed protein -
12 Sobic.002G113400 dnaJ domain containing protein, expressed -
13 Sobic.002G123600 expressed protein -
14 Sobic.003G409600 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
15 Sobic.010G018900 pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
17 Sobic.006G236800 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
18 Sobic.007G221700 expressed protein -
19 Sobic.004G000400 OsPDIL1-4 protein disulfide isomerase PDIL1-4, expressed K09580: PDIA1, protein disulfide-isomerase A1
20 Sobic.003G354500 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic002G271400 Sobic002G271400 Sobic004G306100 Sobic004G306100 Sobic002G271400--Sobic004G306100 Sobic003G343200 Sobic003G343200 Sobic002G271400--Sobic003G343200 Sobic006G127200 Sobic006G127200 Sobic002G271400--Sobic006G127200 Sobic003G411700 Sobic003G411700 Sobic002G271400--Sobic003G411700 Sobic001G025900 Sobic001G025900 Sobic002G271400--Sobic001G025900 Sobic010G222800 Sobic010G222800 Sobic002G271400--Sobic010G222800 Sobic003G013800 Sobic003G013800 Sobic002G271400--Sobic003G013800 Sobic008G004900 Sobic008G004900 Sobic002G271400--Sobic008G004900 Sobic010G024000 Sobic010G024000 Sobic002G271400--Sobic010G024000 Sobic004G306100--Sobic002G271400 Sobic010G103500 Sobic010G103500 Sobic004G306100--Sobic010G103500 Sobic004G306100--Sobic003G411700 Sobic003G315700 Sobic003G315700 Sobic004G306100--Sobic003G315700 Sobic004G306100--Sobic006G127200 Sobic003G409600 Sobic003G409600 Sobic004G306100--Sobic003G409600 Sobic002G260700 Sobic002G260700 Sobic004G306100--Sobic002G260700 Sobic002G123600 Sobic002G123600 Sobic004G306100--Sobic002G123600 Sobic010G052400 Sobic010G052400 Sobic004G306100--Sobic010G052400 Sobic003G343200--Sobic010G222800 Sobic010G257500 Sobic010G257500 Sobic003G343200--Sobic010G257500 Sobic003G343200--Sobic002G271400 Sobic001G534400 Sobic001G534400 Sobic003G343200--Sobic001G534400 Sobic003G343200--Sobic003G411700 Sobic004G014100 Sobic004G014100 Sobic003G343200--Sobic004G014100 Sobic003G289700 Sobic003G289700 Sobic003G343200--Sobic003G289700 Sobic003G343200--Sobic004G306100 Sobic003G343200--Sobic010G024000 Sobic006G127200--Sobic004G306100 Sobic006G127200--Sobic002G271400 Sobic006G127200--Sobic010G257500 Sobic006G127200--Sobic002G123600 Sobic006G127200--Sobic003G409600 Sobic003G226700 Sobic003G226700 Sobic006G127200--Sobic003G226700 Sobic009G081800 Sobic009G081800 Sobic006G127200--Sobic009G081800 Sobic006G127200--Sobic010G103500 Sobic006G127200--Sobic001G025900 Sobic003G411700--Sobic010G222800 Sobic003G411700--Sobic004G306100 Sobic003G411700--Sobic002G271400 Sobic003G411700--Sobic010G103500 Sobic001G425200 Sobic001G425200 Sobic003G411700--Sobic001G425200 Sobic003G411700--Sobic003G343200 Sobic001G212600 Sobic001G212600 Sobic003G411700--Sobic001G212600 Sobic003G411700--Sobic010G024000 Sobic005G160200 Sobic005G160200 Sobic003G411700--Sobic005G160200 Sobic001G013400 Sobic001G013400 Sobic001G025900--Sobic001G013400 Sobic002G113400 Sobic002G113400 Sobic001G025900--Sobic002G113400 Sobic002G290000 Sobic002G290000 Sobic001G025900--Sobic002G290000 Sobic001G025900--Sobic002G271400 Sobic005G110535 Sobic005G110535 Sobic001G025900--Sobic005G110535 Sobic004G321400 Sobic004G321400 Sobic001G025900--Sobic004G321400 Sobic004G053900 Sobic004G053900 Sobic001G025900--Sobic004G053900 Sobic004G328300 Sobic004G328300 Sobic001G025900--Sobic004G328300 Sobic006G236800 Sobic006G236800 Sobic001G025900--Sobic006G236800 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic010G222800--Sobic003G411700 Sobic002G112000 Sobic002G112000 Sobic010G222800--Sobic002G112000 Sobic008G070700 Sobic008G070700 Sobic010G222800--Sobic008G070700 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic003G423800 Sobic003G423800 Sobic010G222800--Sobic003G423800 Sobic008G131900 Sobic008G131900 Sobic010G222800--Sobic008G131900 Sobic003G013800--Sobic002G271400 Sobic003G013800--Sobic010G222800 Sobic003G013800--Sobic008G070700 Sobic003G013800--Sobic003G343200 Sobic003G013800--Sobic002G113400 Sobic004G095200 Sobic004G095200 Sobic003G013800--Sobic004G095200 Sobic003G013800--Sobic004G306100 Sobic003G013800--Sobic003G289700 Sobic003G013800--Sobic002G112000 Sobic001G248400 Sobic001G248400 Sobic008G004900--Sobic001G248400 Sobic001G082800 Sobic001G082800 Sobic008G004900--Sobic001G082800 Sobic009G131200 Sobic009G131200 Sobic008G004900--Sobic009G131200 Sobic002G390800 Sobic002G390800 Sobic008G004900--Sobic002G390800 Sobic010G038200 Sobic010G038200 Sobic008G004900--Sobic010G038200 Sobic002G308000 Sobic002G308000 Sobic008G004900--Sobic002G308000 Sobic008G004900--Sobic002G271400 Sobic008G004900--Sobic002G113400 Sobic009G136000 Sobic009G136000 Sobic008G004900--Sobic009G136000 Sobic010G024000--Sobic010G222800 Sobic010G024000--Sobic008G131900 Sobic010G024000--Sobic007G076200 Sobic010G024000--Sobic003G411700 Sobic010G024000--Sobic002G271400 Sobic002G173400 Sobic002G173400 Sobic010G024000--Sobic002G173400 Sobic006G193100 Sobic006G193100 Sobic010G024000--Sobic006G193100 Sobic010G024000--Sobic003G343200 Sobic002G052800 Sobic002G052800 Sobic010G024000--Sobic002G052800
Octagon: transcription factors


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