Gene annotation
Transcriptome id Sobic.003G315700.3,Sobic.003G315700.1
Synonym STI, Sb03g036320
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt C5XLN6
Pfam PF12169 PF00004
Panther DB PTHR11669 PTHR11669:SF12
NCBI CDD KOG0989; Replication factor C, subunit RFC4
KEGG Orthology -
Gene Ontology GO:0003887; DNA-directed DNA polymerase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT2G02480 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os12g10670.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a027299 , Zm00025a054454
Brachypodium KQJ88770 , KQJ88771 , PNT63790
Barley HORVU4Hr1G015110.8 , HORVU4Hr1G015110.9 , HORVU4Hr1G015110.2 , HORVU4Hr1G015110.3 , HORVU4Hr1G015110.1 , HORVU4Hr1G015110.6 , HORVU4Hr1G015110.7 , HORVU4Hr1G015110.4 , HORVU4Hr1G015110.5 , HORVU4Hr1G015110.18 , HORVU4Hr1G015110.19 , HORVU4Hr1G015110.10 , HORVU4Hr1G015110.11 , HORVU4Hr1G015110.12 , HORVU4Hr1G015110.13 , HORVU4Hr1G015110.14 , HORVU4Hr1G015110.15 , HORVU4Hr1G015110.16 , HORVU4Hr1G015110.17 , HORVU4Hr1G015110.20
Wheat TraesCS4A02G226500 , TraesCS4D02G086000 , TraesCS4D02G086000 , TraesCS4B02G090000 , TraesCS4B02G090000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
2 Sobic.006G193100 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
3 Sobic.004G306100 expressed protein -
4 Sobic.002G290000 helicase, putative, expressed K15362: BRIP1, BACH1, fanconi anemia group J protein
5 Sobic.009G202801 - K10406: kinesin family member C2/C3
6 Sobic.004G328300 expressed protein -
7 Sobic.003G409600 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
8 Sobic.002G113400 dnaJ domain containing protein, expressed -
9 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
10 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
11 Sobic.004G053900 expressed protein -
12 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
13 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
14 Sobic.003G292700 kinesin motor protein-related, putative, expressed K10406: kinesin family member C2/C3
15 Sobic.001G361200 expressed protein -
16 Sobic.007G196000 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
17 Sobic.002G271400 RNA recognition motif containing protein, putative, expressed -
18 Sobic.005G110535 - K02540: DNA replication licensing factor MCM2
19 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
20 Sobic.004G095200 Peptidase family C50, putative, expressed K02365: separase


Gene co-expression network
sample Sobic003G315700 Sobic003G315700 Sobic008G148000 Sobic008G148000 Sobic003G315700--Sobic008G148000 Sobic006G193100 Sobic006G193100 Sobic003G315700--Sobic006G193100 Sobic004G306100 Sobic004G306100 Sobic003G315700--Sobic004G306100 Sobic002G290000 Sobic002G290000 Sobic003G315700--Sobic002G290000 Sobic009G202801 Sobic009G202801 Sobic003G315700--Sobic009G202801 Sobic004G328300 Sobic004G328300 Sobic003G315700--Sobic004G328300 Sobic003G409600 Sobic003G409600 Sobic003G315700--Sobic003G409600 Sobic002G113400 Sobic002G113400 Sobic003G315700--Sobic002G113400 Sobic009G052100 Sobic009G052100 Sobic003G315700--Sobic009G052100 Sobic005G000500 Sobic005G000500 Sobic008G148000--Sobic005G000500 Sobic002G204400 Sobic002G204400 Sobic008G148000--Sobic002G204400 Sobic001G170800 Sobic001G170800 Sobic008G148000--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic008G148000--Sobic010G008900 Sobic007G168900 Sobic007G168900 Sobic008G148000--Sobic007G168900 Sobic004G271300 Sobic004G271300 Sobic008G148000--Sobic004G271300 Sobic003G444100 Sobic003G444100 Sobic008G148000--Sobic003G444100 Sobic003G314900 Sobic003G314900 Sobic008G148000--Sobic003G314900 Sobic009G184200 Sobic009G184200 Sobic008G148000--Sobic009G184200 Sobic003G031700 Sobic003G031700 Sobic006G193100--Sobic003G031700 Sobic001G008300 Sobic001G008300 Sobic006G193100--Sobic001G008300 Sobic006G193100--Sobic009G202801 Sobic006G193100--Sobic003G315700 Sobic006G193100--Sobic004G328300 Sobic006G193100--Sobic008G148000 Sobic002G319300 Sobic002G319300 Sobic006G193100--Sobic002G319300 Sobic009G136000 Sobic009G136000 Sobic006G193100--Sobic009G136000 Sobic006G193100--Sobic002G204400 Sobic002G271400 Sobic002G271400 Sobic004G306100--Sobic002G271400 Sobic010G103500 Sobic010G103500 Sobic004G306100--Sobic010G103500 Sobic003G411700 Sobic003G411700 Sobic004G306100--Sobic003G411700 Sobic004G306100--Sobic003G315700 Sobic006G127200 Sobic006G127200 Sobic004G306100--Sobic006G127200 Sobic004G306100--Sobic003G409600 Sobic002G260700 Sobic002G260700 Sobic004G306100--Sobic002G260700 Sobic002G123600 Sobic002G123600 Sobic004G306100--Sobic002G123600 Sobic010G052400 Sobic010G052400 Sobic004G306100--Sobic010G052400 Sobic005G110535 Sobic005G110535 Sobic002G290000--Sobic005G110535 Sobic001G377700 Sobic001G377700 Sobic002G290000--Sobic001G377700 Sobic007G125300 Sobic007G125300 Sobic002G290000--Sobic007G125300 Sobic009G087000 Sobic009G087000 Sobic002G290000--Sobic009G087000 Sobic010G147700 Sobic010G147700 Sobic002G290000--Sobic010G147700 Sobic001G013400 Sobic001G013400 Sobic002G290000--Sobic001G013400 Sobic002G290000--Sobic002G113400 Sobic008G129200 Sobic008G129200 Sobic002G290000--Sobic008G129200 Sobic004G053900 Sobic004G053900 Sobic002G290000--Sobic004G053900 Sobic003G292700 Sobic003G292700 Sobic009G202801--Sobic003G292700 Sobic009G202801--Sobic006G193100 Sobic009G202801--Sobic003G031700 Sobic009G202801--Sobic003G315700 Sobic006G142500 Sobic006G142500 Sobic009G202801--Sobic006G142500 Sobic009G202801--Sobic001G008300 Sobic002G074000 Sobic002G074000 Sobic009G202801--Sobic002G074000 Sobic002G317700 Sobic002G317700 Sobic009G202801--Sobic002G317700 Sobic004G246500 Sobic004G246500 Sobic009G202801--Sobic004G246500 Sobic005G055600 Sobic005G055600 Sobic004G328300--Sobic005G055600 Sobic004G328300--Sobic006G193100 Sobic004G328300--Sobic003G315700 Sobic004G328300--Sobic004G053900 Sobic001G025900 Sobic001G025900 Sobic004G328300--Sobic001G025900 Sobic001G023500 Sobic001G023500 Sobic004G328300--Sobic001G023500 Sobic001G154300 Sobic001G154300 Sobic004G328300--Sobic001G154300 Sobic004G328300--Sobic009G202801 Sobic004G328300--Sobic002G113400 Sobic003G409600--Sobic004G306100 Sobic003G409600--Sobic003G315700 Sobic007G219100 Sobic007G219100 Sobic003G409600--Sobic007G219100 Sobic003G409600--Sobic002G271400 Sobic003G409600--Sobic006G127200 Sobic003G409600--Sobic009G202801 Sobic003G409600--Sobic010G103500 Sobic003G409600--Sobic003G411700 Sobic003G409600--Sobic010G052400 Sobic002G113400--Sobic004G053900 Sobic002G113400--Sobic001G025900 Sobic002G297500 Sobic002G297500 Sobic002G113400--Sobic002G297500 Sobic002G113400--Sobic002G290000 Sobic002G113400--Sobic001G013400 Sobic002G113400--Sobic008G148000 Sobic002G113400--Sobic005G110535 Sobic002G113400--Sobic007G125300 Sobic010G051100 Sobic010G051100 Sobic002G113400--Sobic010G051100 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic004G156200 Sobic004G156200 Sobic009G052100--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic006G071628 Sobic006G071628 Sobic009G052100--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic009G052100--Sobic010G250800 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300
Octagon: transcription factors


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