Gene annotation
Transcriptome id Sobic.007G196000.10,Sobic.007G196000.1,Sobic.007G196000.2,Sobic.007G196000.5,Sobic.007G196000.3,Sobic.007G196000.7,Sobic.007G196000.8,Sobic.007G196000.9
Synonym UBP1, ATUBP1, Sb07g026450
Functional annotation ubiquitin carboxyl-terminal hydrolase family protein, expressed
UniProt A0A1Z5RAR0 , A0A1B6PIN2 , A0A1Z5RAP2 , C5YI44 , A0A1Z5RBI7 , A0A1Z5RB95
Pfam PF13423 PF00443
Panther DB PTHR24006 PTHR24006:SF437
NCBI CDD KOG1867; Ubiquitin-specific protease KOG1873Ubiquitin-specific protease
KEGG Orthology K11844; ubiquitin carboxyl-terminal hydrolase 16/45
Gene Ontology GO:0016579; protein deubiquitination


Orthologs (automatic annotation)
TAIR AT2G32780 : ubiquitin-specific protease 2,ubiquitin-specific protease 1
RAP-DB (Rice) LOC_Os09g32740.1,LOC_Os08g41530.1 : ubiquitin carboxyl-terminal hydrolase family protein, expressed
MaizeGDB (Corn) Zm00025a005240
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G315700 AAA-type ATPase family protein, putative, expressed -
2 Sobic.008G148000 kinesin motor domain containing protein, putative, expressed K10400: kinesin family member 15
3 Sobic.007G125300 BRCA1 C Terminus domain containing protein, expressed -
4 Sobic.005G000500 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
5 Sobic.002G204400 kinesin motor protein-related, putative, expressed K11498: centromeric protein E
6 Sobic.009G087300 mitotic checkpoint family protein, putative, expressed -
7 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
8 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
9 Sobic.004G001600 kinesin motor domain containing protein, putative, expressed K10401: kinesin family member 18/19
10 Sobic.010G103500 ATMAP70 protein, putative, expressed -
11 Sobic.002G113400 dnaJ domain containing protein, expressed -
12 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
13 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
14 Sobic.003G201000 WD domain, G-beta repeat domain containing protein, expressed -
15 Sobic.009G202801 - K10406: kinesin family member C2/C3
16 Sobic.006G281400 expressed protein -
17 Sobic.001G416000 kinesin-related protein, putative, expressed K10398: KIF11, kinesin family member 11
18 Sobic.003G283600 HVA22, putative, expressed -
19 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
20 Sobic.003G423600 expressed protein K06228: fused


Gene co-expression network
sample Sobic007G196000 Sobic007G196000 Sobic003G315700 Sobic003G315700 Sobic007G196000--Sobic003G315700 Sobic008G148000 Sobic008G148000 Sobic007G196000--Sobic008G148000 Sobic007G125300 Sobic007G125300 Sobic007G196000--Sobic007G125300 Sobic005G000500 Sobic005G000500 Sobic007G196000--Sobic005G000500 Sobic002G204400 Sobic002G204400 Sobic007G196000--Sobic002G204400 Sobic009G087300 Sobic009G087300 Sobic007G196000--Sobic009G087300 Sobic008G169400 Sobic008G169400 Sobic007G196000--Sobic008G169400 Sobic006G272500 Sobic006G272500 Sobic007G196000--Sobic006G272500 Sobic004G001600 Sobic004G001600 Sobic007G196000--Sobic004G001600 Sobic003G315700--Sobic008G148000 Sobic006G193100 Sobic006G193100 Sobic003G315700--Sobic006G193100 Sobic004G306100 Sobic004G306100 Sobic003G315700--Sobic004G306100 Sobic002G290000 Sobic002G290000 Sobic003G315700--Sobic002G290000 Sobic009G202801 Sobic009G202801 Sobic003G315700--Sobic009G202801 Sobic004G328300 Sobic004G328300 Sobic003G315700--Sobic004G328300 Sobic003G409600 Sobic003G409600 Sobic003G315700--Sobic003G409600 Sobic002G113400 Sobic002G113400 Sobic003G315700--Sobic002G113400 Sobic009G052100 Sobic009G052100 Sobic003G315700--Sobic009G052100 Sobic008G148000--Sobic005G000500 Sobic008G148000--Sobic002G204400 Sobic001G170800 Sobic001G170800 Sobic008G148000--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic008G148000--Sobic010G008900 Sobic007G168900 Sobic007G168900 Sobic008G148000--Sobic007G168900 Sobic004G271300 Sobic004G271300 Sobic008G148000--Sobic004G271300 Sobic003G444100 Sobic003G444100 Sobic008G148000--Sobic003G444100 Sobic003G314900 Sobic003G314900 Sobic008G148000--Sobic003G314900 Sobic009G184200 Sobic009G184200 Sobic008G148000--Sobic009G184200 Sobic007G125300--Sobic002G290000 Sobic005G110535 Sobic005G110535 Sobic007G125300--Sobic005G110535 Sobic007G125300--Sobic008G148000 Sobic004G053900 Sobic004G053900 Sobic007G125300--Sobic004G053900 Sobic001G109700 Sobic001G109700 Sobic007G125300--Sobic001G109700 Sobic001G377700 Sobic001G377700 Sobic007G125300--Sobic001G377700 Sobic007G125300--Sobic002G204400 Sobic003G118100 Sobic003G118100 Sobic007G125300--Sobic003G118100 Sobic007G125300--Sobic002G113400 Sobic005G000500--Sobic007G168900 Sobic005G000500--Sobic001G170800 Sobic005G000500--Sobic008G148000 Sobic005G000500--Sobic003G444100 Sobic005G000500--Sobic003G314900 Sobic005G000500--Sobic004G271300 Sobic005G144600 Sobic005G144600 Sobic005G000500--Sobic005G144600 Sobic005G000500--Sobic010G008900 Sobic001G177900 Sobic001G177900 Sobic005G000500--Sobic001G177900 Sobic002G204400--Sobic009G184200 Sobic002G204400--Sobic008G148000 Sobic003G393100 Sobic003G393100 Sobic002G204400--Sobic003G393100 Sobic010G105400 Sobic010G105400 Sobic002G204400--Sobic010G105400 Sobic006G281400 Sobic006G281400 Sobic002G204400--Sobic006G281400 Sobic002G204400--Sobic005G000500 Sobic007G027900 Sobic007G027900 Sobic002G204400--Sobic007G027900 Sobic001G398400 Sobic001G398400 Sobic002G204400--Sobic001G398400 Sobic002G204400--Sobic004G271300 Sobic009G087300--Sobic002G204400 Sobic009G087300--Sobic010G105400 Sobic009G087300--Sobic005G144600 Sobic002G303800 Sobic002G303800 Sobic009G087300--Sobic002G303800 Sobic003G201000 Sobic003G201000 Sobic009G087300--Sobic003G201000 Sobic001G122100 Sobic001G122100 Sobic009G087300--Sobic001G122100 Sobic003G444300 Sobic003G444300 Sobic009G087300--Sobic003G444300 Sobic009G087300--Sobic006G281400 Sobic009G087300--Sobic005G000500 Sobic001G079900 Sobic001G079900 Sobic008G169400--Sobic001G079900 Sobic003G153900 Sobic003G153900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic009G124800 Sobic009G124800 Sobic006G272500--Sobic009G124800 Sobic001G285200 Sobic001G285200 Sobic006G272500--Sobic001G285200 Sobic006G272500--Sobic002G293700 Sobic010G010900 Sobic010G010900 Sobic006G272500--Sobic010G010900 Sobic002G419200 Sobic002G419200 Sobic006G272500--Sobic002G419200 Sobic001G296100 Sobic001G296100 Sobic006G272500--Sobic001G296100 Sobic007G160300 Sobic007G160300 Sobic006G272500--Sobic007G160300 Sobic006G272500--Sobic002G370400 Sobic008G148500 Sobic008G148500 Sobic006G272500--Sobic008G148500 Sobic010G103500 Sobic010G103500 Sobic004G001600--Sobic010G103500 Sobic004G001600--Sobic004G306100 Sobic009G120400 Sobic009G120400 Sobic004G001600--Sobic009G120400 Sobic002G426100 Sobic002G426100 Sobic004G001600--Sobic002G426100 Sobic004G001600--Sobic003G315700 Sobic006G126800 Sobic006G126800 Sobic004G001600--Sobic006G126800 Sobic010G052400 Sobic010G052400 Sobic004G001600--Sobic010G052400 Sobic002G192900 Sobic002G192900 Sobic004G001600--Sobic002G192900 Sobic004G001600--Sobic003G409600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.