Gene annotation
Transcriptome id Sobic.008G169400.1
Synonym SbARF19;auxin response factor, Sb08g021460, auxin response factor, SbARF19, ARF6
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root" (PubMedID : 20499123)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
auxin response factor, putative, expressed
UniProt C5YRZ9
Pfam PF02309 PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0009725response to hormone


Orthologs (automatic annotation)
TAIR AT1G30330 : auxin response factor 6
RAP-DB (Rice) LOC_Os12g41950.1 : auxin response factor, putative, expressed
MaizeGDB (Corn) Zm00025a004682 , Zm00025a041909 , Zm00025a025369 , Zm00025a018041
Brachypodium KQJ85792 , KQK17112 , PNT62115
Barley HORVU7Hr1G106280.17 , HORVU7Hr1G106280.10 , HORVU7Hr1G106280.13 , HORVU5Hr1G009650.30 , HORVU4Hr1G029700.41 , HORVU4Hr1G029700.42 , HORVU5Hr1G009650.37 , HORVU5Hr1G009650.36 , HORVU5Hr1G009650.35 , HORVU5Hr1G009650.34 , HORVU5Hr1G009650.33 , HORVU5Hr1G009650.32 , HORVU5Hr1G009650.31 , HORVU4Hr1G029700.38 , HORVU4Hr1G029700.16 , HORVU4Hr1G029700.17 , HORVU4Hr1G029700.14 , HORVU4Hr1G029700.15 , HORVU4Hr1G029700.12 , HORVU4Hr1G029700.13 , HORVU4Hr1G029700.10 , HORVU4Hr1G029700.11 , HORVU4Hr1G029700.18 , HORVU4Hr1G029700.19 , HORVU4Hr1G029700.4 , HORVU4Hr1G029700.5 , HORVU7Hr1G106280.4 , HORVU4Hr1G029700.7 , HORVU7Hr1G106280.2 , HORVU4Hr1G029700.1 , HORVU4Hr1G029700.2 , HORVU7Hr1G106280.1 , HORVU4Hr1G029700.8 , HORVU4Hr1G029700.9 , HORVU7Hr1G106280.8 , HORVU7Hr1G106280.9 , HORVU5Hr1G009650.19 , HORVU5Hr1G009650.9 , HORVU5Hr1G009650.8 , HORVU5Hr1G009650.5 , HORVU5Hr1G009650.4 , HORVU5Hr1G009650.7 , HORVU5Hr1G009650.6 , HORVU5Hr1G009650.1 , HORVU5Hr1G009650.3 , HORVU5Hr1G009650.2 , HORVU4Hr1G029700.29 , HORVU4Hr1G029700.28 , HORVU4Hr1G029700.27 , HORVU4Hr1G029700.26 , HORVU4Hr1G029700.25 , HORVU4Hr1G029700.24 , HORVU4Hr1G029700.23 , HORVU4Hr1G029700.22 , HORVU4Hr1G029700.21 , HORVU4Hr1G029700.20 , HORVU2Hr1G121110.28 , HORVU2Hr1G121110.27 , HORVU2Hr1G121110.26 , HORVU2Hr1G121110.21 , HORVU5Hr1G009650.24 , HORVU5Hr1G009650.25 , HORVU5Hr1G009650.26 , HORVU5Hr1G009650.27 , HORVU5Hr1G009650.20 , HORVU5Hr1G009650.21 , HORVU5Hr1G009650.22 , HORVU5Hr1G009650.23 , HORVU5Hr1G009650.28 , HORVU5Hr1G009650.29 , HORVU5Hr1G009650.11 , HORVU4Hr1G029700.34 , HORVU4Hr1G029700.35 , HORVU7Hr1G106280.16 , HORVU4Hr1G029700.37 , HORVU4Hr1G029700.30 , HORVU4Hr1G029700.31 , HORVU7Hr1G106280.12 , HORVU4Hr1G029700.33 , HORVU7Hr1G106280.6 , HORVU7Hr1G106280.7 , HORVU2Hr1G121110.34 , HORVU2Hr1G121110.35 , HORVU2Hr1G121110.36 , HORVU2Hr1G121110.37 , HORVU2Hr1G121110.30 , HORVU2Hr1G121110.31 , HORVU2Hr1G121110.32 , HORVU2Hr1G121110.33 , HORVU7Hr1G106280.5 , HORVU7Hr1G106280.3 , HORVU4Hr1G029700.6 , HORVU5Hr1G009650.18 , HORVU5Hr1G009650.10 , HORVU5Hr1G009650.13 , HORVU5Hr1G009650.12 , HORVU5Hr1G009650.15 , HORVU5Hr1G009650.14 , HORVU5Hr1G009650.17 , HORVU5Hr1G009650.16 , HORVU7Hr1G106280.18 , HORVU4Hr1G029700.39 , HORVU4Hr1G029700.44 , HORVU4Hr1G029700.40 , HORVU7Hr1G106280.14 , HORVU7Hr1G106280.15 , HORVU4Hr1G029700.36
Wheat TraesCS5D02G045700 , TraesCS5D02G045700 , TraesCS5D02G045700 , TraesCS7A02G461700 , TraesCS2A02G547800 , TraesCS5A02G038300 , TraesCS5A02G038300 , TraesCS5A02G038300 , TraesCS5B02G039800 , TraesCS2B02G578500 , TraesCS7B02G363100 , TraesCS7B02G363100 , TraesCS7A02G461700 , TraesCS7A02G461700 , TraesCS7A02G461700 , TraesCS7D02G449900 , TraesCS7D02G449900 , TraesCS7D02G449900 , TraesCS2D02G548900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G079900 expressed protein -
2 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
4 Sobic.009G141700 expressed protein -
5 Sobic.002G370400 expressed protein -
6 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
7 Sobic.002G293700 ATXR, putative, expressed -
8 Sobic.009G158900 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.003G397100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
10 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
11 Sobic.003G027800 protein kinase family protein, putative, expressed -
12 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
13 Sobic.001G242300 expressed protein -
14 Sobic.002G260700 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
15 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
16 Sobic.006G046600 expressed protein -
17 Sobic.001G008300 expressed protein -
18 Sobic.001G384700 RNA-binding zinc finger protein, putative, expressed -
19 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.003G336900 inactive receptor kinase At2g26730 precursor, putative, expressed -


Gene co-expression network
sample Sobic008G169400 Sobic008G169400 Sobic001G079900 Sobic001G079900 Sobic008G169400--Sobic001G079900 Sobic003G153900 Sobic003G153900 Sobic008G169400--Sobic003G153900 Sobic007G031300 Sobic007G031300 Sobic008G169400--Sobic007G031300 Sobic009G141700 Sobic009G141700 Sobic008G169400--Sobic009G141700 Sobic002G370400 Sobic002G370400 Sobic008G169400--Sobic002G370400 Sobic001G494100 Sobic001G494100 Sobic008G169400--Sobic001G494100 Sobic002G293700 Sobic002G293700 Sobic008G169400--Sobic002G293700 Sobic009G158900 Sobic009G158900 Sobic008G169400--Sobic009G158900 Sobic003G397100 Sobic003G397100 Sobic008G169400--Sobic003G397100 Sobic005G032600 Sobic005G032600 Sobic001G079900--Sobic005G032600 Sobic001G384700 Sobic001G384700 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic003G351900 Sobic003G351900 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic001G079900--Sobic009G141700 Sobic003G153900--Sobic003G351900 Sobic003G153900--Sobic008G169400 Sobic002G021200 Sobic002G021200 Sobic003G153900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic003G153900--Sobic006G281900 Sobic003G153900--Sobic001G079900 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic006G008300 Sobic006G008300 Sobic003G153900--Sobic006G008300 Sobic007G031300--Sobic008G169400 Sobic001G211500 Sobic001G211500 Sobic007G031300--Sobic001G211500 Sobic004G129500 Sobic004G129500 Sobic007G031300--Sobic004G129500 Sobic001G296800 Sobic001G296800 Sobic007G031300--Sobic001G296800 Sobic002G430900 Sobic002G430900 Sobic007G031300--Sobic002G430900 Sobic003G028400 Sobic003G028400 Sobic007G031300--Sobic003G028400 Sobic001G210000 Sobic001G210000 Sobic007G031300--Sobic001G210000 Sobic007G031300--Sobic003G153900 Sobic003G212600 Sobic003G212600 Sobic007G031300--Sobic003G212600 Sobic009G141700--Sobic001G079900 Sobic009G141700--Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic009G141700--Sobic002G216600 Sobic009G141700--Sobic008G169400 Sobic003G323300 Sobic003G323300 Sobic009G141700--Sobic003G323300 Sobic006G046600 Sobic006G046600 Sobic009G141700--Sobic006G046600 Sobic009G141700--Sobic005G062600 Sobic006G067700 Sobic006G067700 Sobic009G141700--Sobic006G067700 Sobic006G022400 Sobic006G022400 Sobic009G141700--Sobic006G022400 Sobic001G487200 Sobic001G487200 Sobic002G370400--Sobic001G487200 Sobic001G231200 Sobic001G231200 Sobic002G370400--Sobic001G231200 Sobic004G315700 Sobic004G315700 Sobic002G370400--Sobic004G315700 Sobic006G272500 Sobic006G272500 Sobic002G370400--Sobic006G272500 Sobic002G370400--Sobic009G212100 Sobic002G370400--Sobic001G296800 Sobic009G124800 Sobic009G124800 Sobic002G370400--Sobic009G124800 Sobic002G370400--Sobic003G153900 Sobic010G211800 Sobic010G211800 Sobic002G370400--Sobic010G211800 Sobic001G494100--Sobic006G046600 Sobic001G494100--Sobic008G169400 Sobic005G204100 Sobic005G204100 Sobic001G494100--Sobic005G204100 Sobic004G227500 Sobic004G227500 Sobic001G494100--Sobic004G227500 Sobic003G277900 Sobic003G277900 Sobic001G494100--Sobic003G277900 Sobic006G262100 Sobic006G262100 Sobic001G494100--Sobic006G262100 Sobic001G494100--Sobic002G216600 Sobic004G199700 Sobic004G199700 Sobic001G494100--Sobic004G199700 Sobic001G315400 Sobic001G315400 Sobic001G494100--Sobic001G315400 Sobic002G293700--Sobic006G272500 Sobic002G293700--Sobic009G124800 Sobic006G257200 Sobic006G257200 Sobic002G293700--Sobic006G257200 Sobic006G241800 Sobic006G241800 Sobic002G293700--Sobic006G241800 Sobic002G071850 Sobic002G071850 Sobic002G293700--Sobic002G071850 Sobic001G285200 Sobic001G285200 Sobic002G293700--Sobic001G285200 Sobic002G293700--Sobic002G370400 Sobic002G293700--Sobic008G169400 Sobic003G031700 Sobic003G031700 Sobic002G293700--Sobic003G031700 Sobic003G336900 Sobic003G336900 Sobic009G158900--Sobic003G336900 Sobic009G024900 Sobic009G024900 Sobic009G158900--Sobic009G024900 Sobic002G390800 Sobic002G390800 Sobic009G158900--Sobic002G390800 Sobic009G158900--Sobic008G169400 Sobic006G193100 Sobic006G193100 Sobic009G158900--Sobic006G193100 Sobic002G173400 Sobic002G173400 Sobic009G158900--Sobic002G173400 Sobic004G063600 Sobic004G063600 Sobic009G158900--Sobic004G063600 Sobic007G221700 Sobic007G221700 Sobic009G158900--Sobic007G221700 Sobic009G158900--Sobic001G079900 Sobic001G242300 Sobic001G242300 Sobic003G397100--Sobic001G242300 Sobic002G123600 Sobic002G123600 Sobic003G397100--Sobic002G123600 Sobic002G260700 Sobic002G260700 Sobic003G397100--Sobic002G260700 Sobic008G090300 Sobic008G090300 Sobic003G397100--Sobic008G090300 Sobic003G397100--Sobic008G169400 Sobic008G112100 Sobic008G112100 Sobic003G397100--Sobic008G112100 Sobic010G143600 Sobic010G143600 Sobic003G397100--Sobic010G143600 Sobic001G448100 Sobic001G448100 Sobic003G397100--Sobic001G448100 Sobic008G031200 Sobic008G031200 Sobic003G397100--Sobic008G031200
Octagon: transcription factors


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